Effect of the 6-Methyl Group on Peroxyl Radical Trapping by 5-Hydroxyand 5-Amino- Derivatives of 1,3-Dimethyluracil
作者:Stanislav Grabovskiy、Arcadiy Antipin、Yulia Grabovskaya、Nadezhda Andriayshina、Oksana Akchurina、Natalie Kabal'nova
DOI:10.2174/1570178614666161121123024
日期:2017.2.13
Background: Many synthetic and natural uracil derivatives have biological activity. Furthermore,
many of these derivatives have pro- and antioxidant properties, but the mechanism of these
processes is far from being understood.
Methods: Oxygen-uptake kinetics and computational methods (CBS-QB3, M062X/MG3S and SMDM05/
MG3S) were combined to study the reaction of peroxyl radicals with five organic-soluble derivatives:
5-amino- and 5-hydroxy-1,3-dimethyluracil, 5-amino- and 5-hydroxy-1,3,6-trimethyluracil, and
5-hydroxy-1,3-dimethyl-6-phenyluracil in chlorobenzene.
Results: The studied uracil derivatives should be classified as inhibitors of medium reactivity kin =
(1-10) × 10-4 M-1 s-1. The methyl group in the 6-position of the pyrimidine ring increases the rate constant
of the reaction with peroxyl radicals by 3-4 times and the stoichiometric coefficient of inhibition.
The calculation of the reaction barrier heights at the SMD-M05/MG3S level of theory for the hydrogen
abstraction is in good agreement with experimental data.
Conclusion: 1,3-Dimethyl-5-aminouracil is transformed by the addition of a methyl group at the
6-position into a favic-like pyrimidine, while the 5-hydroxy derivative becomes a more effective antioxidant.
The bound dissociation energy (O-H or N-H) and the IP for the reactivity forecasting of uracil
derivatives were used, but it was found that this methodology did not lead to good correlation between
experimental and theoretical results. The SMD-M05/MG3S method provided the most accurate calculations
of the reaction barrier heights for hydrogen abstraction from uracil derivatives by peroxyl radical.
背景:许多合成和天然的尿嘧啶衍生物具有生物活性。此外,这些衍生物中的许多具有促进氧化和抗氧化特性,但其作用机制远未被理解。
方法:结合氧摄取动力学和计算方法(CBS-QB3、M062X/MG3S 和 SMDM05/MG3S)研究了过氧自由基与五种有机可溶性衍生物的反应:5-氨基和5-羟基-1,3-二甲基尿嘧啶、5-氨基和5-羟基-1,3,6-三甲基尿嘧啶,以及5-羟基-1,3-二甲基-6-苯基尿嘧啶在氯苯中的反应。
结果:所研究的尿嘧啶衍生物应归类为中等反应活性抑制剂,反应速率常数kin = (1-10) × 10-4 M-1 s-1。嘧啶环的6位甲基增加了与过氧自由基反应的速率常数3-4倍,并增加了抑制的化学计量系数。在SMD-M05/MG3S理论水平上对氢抽提反应势垒高度的计算与实验数据吻合良好。
结论:1,3-二甲基-5-氨基尿嘧啶通过在6位添加一个甲基,转化为类似favic的嘧啶,而5-羟基衍生物则成为更有效的抗氧化剂。使用了结合解离能(O-H或N-H)和IP来进行尿嘧啶衍生物反应性的预测,但发现这种方法并未导致实验和理论结果之间的良好相关性。SMD-M05/MG3S方法为过氧自由基从尿嘧啶衍生物中抽提氢的反应提供了最准确的势垒高度计算。