4-pentynoyl CoA | 50347-32-5

• 分子结构分类: 有机化合物 - 脂质和类脂质分子 - 脂肪酰基
• 英文名称: 4-pentynoyl CoA
• 英文别名: 4-pentynoyl-Coenzyme A；S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxyoxolan-2-yl]methoxy-hydroxyphosphoryl]oxy-hydroxyphosphoryl]oxy-2-hydroxy-3,3-dimethylbutanoyl]amino]propanoylamino]ethyl] pent-4-ynethioate
• CAS: 50347-32-5
• 化学式: C₂₆H₄₀N₇O₁₇P₃S
• 分子量: 847.628
• InChiKey: ZETFFXZDNUYQNB-ZMHDXICWSA-N

计算性质

• 辛醇/水分配系数(LogP)：
  -5.1
• 重原子数：
  54
• 可旋转键数：
  22
• 环数：
  3.0
• sp3杂化的碳原子比例：
  0.62
• 拓扑面积：
  389
• 氢给体数：
  9
• 氢受体数：
  22

反应信息

• 作为反应物：
  描述：

  [1,2,3,4,5-13C5,2-15N]-L-glutamic acid 、 4-pentynoyl CoA 在 磷酸吡哆醛 、 recombinant α-oxoamine synthase 作用下， 以 aq. phosphate buffer 为溶剂， 反应 2.0h， 生成
  参考文献：
  名称：

  α-氧胺合酶的鉴定和α-氨基酮的一锅两步酶法合成

  摘要：

  Alb29 是一种 α-氧代胺合酶，参与Streptomyces albogriseolus MGR072中的 albogrisin 生物合成，被表征并负责将l-谷氨酸掺入酰基辅酶 A 底物。结合Alb29和Mgr36（一种酰基辅酶A连接酶），建立了一锅法合成七个α-氨基酮。当这些α-氨基酮分别加入alb29敲除菌株Δalb29时，观察到具有不同侧链的albogrisin类似物。

  DOI：

  10.1021/acs.orglett.0c03600
• 作为产物：
  描述：

  炔丙基脲 在 盐酸 、 N,N'-二环己基碳二亚胺 作用下， 以 二氯甲烷 、 水 、 乙腈 为溶剂， 反应 4.0h， 生成 4-pentynoyl CoA
  参考文献：
  名称：

  Labeling Lysine Acetyltransferase Substrates with Engineered Enzymes and Functionalized Cofactor Surrogates

  摘要：

  Elucidating biological and pathological functions of protein lysine acetyltransferases (KATs) greatly depends on the knowledge of the dynamic and, spatial localization of their enzymatic targets in the cellular proteome. We report the design and application of chemical probes for facile labeling and detection of substrates of the three major human KAT enzymes. In this approach, we create engineered KATs in junction with synthetic Ac-CoA surrogates to effectively label KAT, substrates even in the presence of competitive nascent cofactor acetyl-CoA. The functionalized and transferable acyl moiety of the Ac-CoA analogs further allowed the labeled substrates to be probed with alkynyl or azido-tagged fluorescent reporters by the copper-catalyzed azide-alkyne cycloaddition. The synthetic cofactors, in combination with either native or rationally engineered KAT enzymes, provide a versatile chemical biology strategy to label and profile cellular targets of KATs at the proteomic level.

  DOI：

  10.1021/ja311636b

文献信息

• Repurposing the 3‐Isocyanobutanoic Acid Adenylation Enzyme SfaB for Versatile Amidation and Thioesterification
  作者：Mengyi Zhu、Lijuan Wang、Jing He

  DOI：10.1002/anie.202010042

  日期：2021.1.25

  molecules with novel skeletons, but also to identify the enzymes that catalyze diverse chemical reactions. Exploring the substrate promiscuity and catalytic mechanism of those biosynthetic enzymes facilitates the development of potential biocatalysts. SfaB is an acyl adenylate‐forming enzyme that adenylates a unique building block, 3‐isocyanobutanoic acid, in the biosynthetic pathway of the diisonitrile

  微生物天然产物的基因组挖掘使化学家不仅能够发现具有新颖骨架的生物活性分子，而且能够识别催化多种化学反应的酶。探索这些生物合成酶的底物混杂性和催化机理有助于开发潜在的生物催化剂。SfaB是一种形成酰基腺苷酸的酶，可在由硫链霉菌产生的二异腈自然产物SF2768的生物合成途径中，对独特的结构单元3-异氰基丁酸进行腺苷酸化。，并且该AMP连接酶被证明可以接受各种短链脂肪酸（SCFA）。在本文中，我们将SfaB重新用于催化那些SCFA与各种胺或硫醇亲核试剂之间的酰胺化或硫酯化反应，从而提供了另一种酶促方法来体外制备相应的酰胺和硫酯。
• Bioorthogonal Chemical Reporters for Monitoring Protein Acetylation
  作者：Yu-Ying Yang、Janice M. Ascano、Howard C. Hang

  DOI：10.1021/ja908871t

  日期：2010.3.24

  Protein acetylation is a key post-translational modification that regulates diverse biological activities in eukaryotes. Here we report bioorthogonal chemical reporters that enable direct in-gel fluorescent visualization and proteome-wide identification of acetylated proteins via Cu(I)-catalyzed azide-alkyne cycloaddition, often termed "click chemistry". We demonstrate that two alkynyl-acetyl-CoA analogues

  蛋白质乙酰化是一种关键的翻译后修饰，可调节真核生物中的多种生物活动。在这里，我们报告了生物正交化学报告基因，通过 Cu(I) 催化的叠氮化物-炔烃环加成反应（通常称为“点击化学”），可以直接进行凝胶内荧光可视化和蛋白质组范围内的乙酰化蛋白质鉴定。我们证明了两种炔基-乙酰基-CoA 类似物，4-戊炔基-CoA 和 5-己炔基-CoA，可作为赖氨酸乙酰转移酶 p300 的有效底物，并用作监测体外 p300 催化的蛋白质乙酰化的敏感试剂。此外，我们证明了三种炔基乙酸盐类似物，即 3-丁炔酸钠、4-戊炔酸钠和 5-己炔酸钠，可以通过生物合成机制代谢结合到细胞蛋白质上，以分析不同细胞类型中的乙酰化蛋白质。对富集的 4-戊烯酸标记蛋白质的质谱分析揭示了许多报道的以及来自 Jurkat T 细胞和赖氨酸乙酰化特定位点的新候选乙酰化蛋白质。此处描述的生物正交化学记者应作为研究蛋白质乙酰化的有力工具。
• Multiple Complexes of Long Aliphatic <i>N</i>-Acyltransferases Lead to Synthesis of 2,6-Diacylated/2-Acyl-Substituted Glycopeptide Antibiotics, Effectively Killing Vancomycin-Resistant Enterococcus
  作者：Syue-Yi Lyu、Yu-Chen Liu、Chin-Yuan Chang、Chuen-Jiuan Huang、Ya-Huang Chiu、Chun-Man Huang、Ning-Shian Hsu、Kuan-Hung Lin、Chang-Jer Wu、Ming-Daw Tsai、Tsung-Lin Li

  DOI：10.1021/ja504125v

  日期：2014.8.6

  Teicoplanin A2-2 (Tei)/A40926 is the last-line antibiotic to treat multidrug-resistant Gram-positive bacterial infections, e.g., methicillinresistant Staphylococcus aurcus (MRSA) and vancomycin-resistant enterococcus (VRE). This class of antibiotics is powered by the N-acyltransferase (NAT) Orf11*/Dbv8 through N-acylation on glucosamine at the central residue of Tei/A40926 pseudoaglycone. The NAT enzyme possesses enormous value in untapped applications; its advanced development is hampered largely due to a lack of structural information. In this report, we present eight high-resolution X-ray crystallographic unary, binary, and ternary complexes in order to decipher the molecular basis for NAT's functionality. The enzyme undergoes a multistage conformational change upon binding of acyl-CoA, thus allowing the uploading of Tei pseudoaglycone to enable the acyl-transfer reaction to take place in the occlusion between the N- and C-halves of the protein. The acyl moiety of acyl-CoA can be bulky or lengthy, allowing a large extent of diversity in new derivatives that can be formed upon its transfer. Vancomycin/synthetic acyl-N-acetyl cysteamine was not expected to be able to serve as a surrogate for an acyl acceptor/donor, respectively. Most strikingly, NAT can catalyze formation of 2-N,6-O-diacylated or C6 -> C2 acyl-substituted Tei analogues through an unusual 1,4-migration mechanism under stoichiometric/solvational reaction control, wherein selected representatives showed excellent biological activities, effectively counteracting major types (VanABC) of VRE.
• Labeling Lysine Acetyltransferase Substrates with Engineered Enzymes and Functionalized Cofactor Surrogates
  作者：Chao Yang、Jiaqi Mi、You Feng、Liza Ngo、Tielong Gao、Leilei Yan、Yujun George Zheng

  DOI：10.1021/ja311636b

  日期：2013.5.29

  Elucidating biological and pathological functions of protein lysine acetyltransferases (KATs) greatly depends on the knowledge of the dynamic and, spatial localization of their enzymatic targets in the cellular proteome. We report the design and application of chemical probes for facile labeling and detection of substrates of the three major human KAT enzymes. In this approach, we create engineered KATs in junction with synthetic Ac-CoA surrogates to effectively label KAT, substrates even in the presence of competitive nascent cofactor acetyl-CoA. The functionalized and transferable acyl moiety of the Ac-CoA analogs further allowed the labeled substrates to be probed with alkynyl or azido-tagged fluorescent reporters by the copper-catalyzed azide-alkyne cycloaddition. The synthetic cofactors, in combination with either native or rationally engineered KAT enzymes, provide a versatile chemical biology strategy to label and profile cellular targets of KATs at the proteomic level.
• Identification of an α-Oxoamine Synthase and a One-Pot Two-Step Enzymatic Synthesis of α-Amino Ketones
  作者：Ting Zhou、Du Gao、Jia-Xin Li、Min-Juan Xu、Jun Xu

  DOI：10.1021/acs.orglett.0c03600

  日期：2021.1.1

  incorporation of l-glutamate to acyl-coenzyme A substrates. Combined with Alb29 and Mgr36 (an acyl-coenzyme A ligase), a one-pot enzymatic system was established to synthesize seven α-amino ketones. When these α-amino ketones were fed into the alb29 knockout strain Δalb29, respectively, the albogrisin analogs with different side chains were observed.

  Alb29 是一种 α-氧代胺合酶，参与Streptomyces albogriseolus MGR072中的 albogrisin 生物合成，被表征并负责将l-谷氨酸掺入酰基辅酶 A 底物。结合Alb29和Mgr36（一种酰基辅酶A连接酶），建立了一锅法合成七个α-氨基酮。当这些α-氨基酮分别加入alb29敲除菌株Δalb29时，观察到具有不同侧链的albogrisin类似物。