2-(4-methoxybenzyl)-5-{2-[2-(2-methoxyethoxy)ethoxy]acetylamino}-2H-pyrazole-3-carboxylic acid | 650609-89-5

• 分子结构分类: 有机化合物 - 有机杂环化合物 - 唑类
• 英文名称: 2-(4-methoxybenzyl)-5-{2-[2-(2-methoxyethoxy)ethoxy]acetylamino}-2H-pyrazole-3-carboxylic acid
• 英文别名: 5-[[2-[2-(2-methoxyethoxy)ethoxy]acetyl]amino]-2-[(4-methoxyphenyl)methyl]pyrazole-3-carboxylic acid
• CAS: 650609-89-5
• 化学式: C₁₉H₂₅N₃O₇
• 分子量: 407.423
• InChiKey: FXQCPEPPVHQQOI-UHFFFAOYSA-N

计算性质

• 辛醇/水分配系数(LogP)：
  1.26
• 重原子数：
  29.0
• 可旋转键数：
  13.0
• 环数：
  2.0
• sp3杂化的碳原子比例：
  0.42
• 拓扑面积：
  121.14
• 氢给体数：
  2.0
• 氢受体数：
  8.0

反应信息

• 作为反应物：
  描述：

  2-(4-methoxybenzyl)-5-{2-[2-(2-methoxyethoxy)ethoxy]acetylamino}-2H-pyrazole-3-carboxylic acid 在 2-氯-1-甲基吡啶碘化物 、 N,N-二异丙基乙胺 作用下， 以 二氯甲烷 为溶剂， 反应 3.0h， 生成 5-((S)-2-{(S)-6-Amino-2-[(5-{2-[2-(2-methoxy-ethoxy)-ethoxy]-acetylamino}-2H-pyrazole-3-carbonyl)-amino]-hexanoylamino}-3-methyl-butyrylamino)-2H-pyrazole-3-carboxylic acid methyl ester; compound with trifluoro-acetic acid
  参考文献：
  名称：

  β-Sheet Ligands in Action:  KLVFF Recognition by Aminopyrazole Hybrid Receptors in Water

  摘要：

  Little is known about the precise mechanism of action of beta-sheet ligands, hampered by the notorious solubility problems involved with protein misfolding and amyloid formation. Recently the nucleation site for the pathogenic aggregation of the Alzheimer's peptide was identified as the KLVFF sequence in the central region of Abeta. A combination of two aminopyrazole ligands with di- or tripepticles taken from this key fragment now furnished water-soluble Abeta-specific ligands which allow model investigations in water. A detailed conformational analysis provides experimental evidence for an increased -sheet content induced in the peptide. Strong indications were also found for the peptide backbone recognition via hydrogen bonds plus hydrophobic contributions between aminopyrazole nuclei and Phe residues. The affinity of these new ligands toward the KKLVFF fragment is highly dependent on their sequence and composition from natural and artificial amino acids. Thus, for the first time, detailed insight is gained into the complexation of beta-sheet ligands with model peptices taken directly from Abeta.

  DOI：

  10.1021/ja045558b
• 作为产物：
  描述：

  5-amino-2-(4-methoxybenzyl)-2H-pyrazole-3-carboxylic acid methyl ester 在 lithium hydroxide 、 1-methyl-2-chloropyridinium chloride 、 N,N-二异丙基乙胺 作用下， 以 四氢呋喃 、 甲醇 、 二氯甲烷 为溶剂， 反应 34.0h， 生成 2-(4-methoxybenzyl)-5-{2-[2-(2-methoxyethoxy)ethoxy]acetylamino}-2H-pyrazole-3-carboxylic acid
  参考文献：
  名称：

  Aminopyrazole Oligomers for β-SheetStabilization of Peptides

  摘要：

  本文介绍了利用设计的人工配体稳定δ-片材的一般概念。这些配体有两个主要特征：它们含有酰化的 3-氨基吡唑，具有 DAD 氢键供体和受体模式；它们被合成为低聚物，以增加它们与δ-片构象中的肽的氢键相互作用。二聚氨基吡唑可通过 N1-Boc 保护的氨基吡唑衍生物 1 与几种二氯酸反应，然后用三氟乙酸进行标准脱保护处理而获得。对于低聚物，对新的吡唑氨基酸进行 N1-PMB 保护，然后使用 PyClop 或 Mukaiyama 试剂与肽偶联进行迭代扩展，最终得到目标化合物。随后，所有的保护基团都在最后一步用温三氟乙酸进行脱保护。对两个二聚关键化合物 3b 和 3f 进行了不同温度下的核磁共振、NOESY 实验和 X 射线晶体学研究，以阐明它们在溶液和固体状态下的构象偏好。所有方法得出的结果都是一样的：两种配体都采用具有高度预取向性的扁平构象和正确的 DAD 模式，以便与扩展构象中的肽发生最佳相互作用。用朊病毒蛋白和阿尔茨海默氏症肽 Aβ (1-40) 进行的聚合试验表明，一些二聚体和寡聚体配体在极低浓度下就能产生很好的效果。

  DOI：

  10.1055/s-2003-41031

文献信息

• New Heterocyclic β-Sheet Ligands with Peptidic Recognition Elements
  作者：P. Rzepecki、H. Gallmeier、N. Geib、Katarina Cernovska、B. König、T. Schrader

  DOI：10.1021/jo0496603

  日期：2004.8.1

  completed the high-yield protocol, which works racemization-free. After preparing a similar key building block with an Fmoc protection at N-3, we developed a strategy suitable for automated synthesis of larger hybrid ligands on a peptide synthesizer. Attachment of the first amino acid to a polystyrene resin over the Sieber amide linker is followed by an iterative sequence consisting of Fmoc deprotection with

  本文详细介绍了新型β-sheet配体的设计，建模和合成以及光谱表征。这些化合物的特征是由氨基吡唑羧酸与天然存在的α-氨基酸的特定组合形成的肽嵌合结构。这些杂合肽在分子建模的帮助下被设计成主要以延伸的构象存在。它们所有的氢键供体和受体都可以在底面上对齐，从而获得与β-折叠的完美互补性。因此，氨基吡唑类化合物具有刚性和高效的DAD序列，可识别整个二肽片段，而天然的α-氨基酸被设计为模仿蛋白质中的识别位点，最终导致序列选择性蛋白质识别。合成规程要么依赖于具有PMB保护基策略的溶液相肽偶联，要么依赖于使用相同保护基的基于Fmoc策略的固相肽偶联。在溶液中，通过催化还原硝基吡唑羧酸前体制备关键的结构单元。随后，是（N- 1 ）-被PMB基保护，并通过HCTU-或T3P-辅助肽与二肽片段偶联而延长，然后PyClop-辅助与另一硝基吡唑羧酸构件偶联。使用热TFA对所有PMB组进行的最终同时脱保护，完成了
• Synthesis and Binding Studies of Alzheimer Ligands on Solid Support
  作者：Petra Rzepecki、Nina Geib、Manuel Peifer、Frank Biesemeier、Thomas Schrader

  DOI：10.1021/jo061918x

  日期：2007.5.1

  Aminopyrazole derivatives constitute the first class of nonpeptidic rationally designed β-sheet ligands. Here we describe a double solid-phase protocol for both synthesis and affinity testing. The presented solid-phase synthesis of four types of hybrid compounds relies on the Fmoc strategy and circumvents subsequent HPLC purification by precipitating the final product from organic solution in pure

  氨基吡唑衍生物构成第一类合理设计的非肽类β-折叠配体。在这里，我们描述了用于合成和亲和力测试的双重固相方案。所提出的四种杂合化合物的固相合成依赖于Fmoc策略，并通过从有机溶液中以纯净形式沉淀出最终产物来规避随后的HPLC纯化。具有内部二肽和四肽桥的六肽和八肽侧基现在可以高产率地用于化合物文库的组合合成，以进行高通量筛选。耐酸性PAM上的固相肽合成（SPPS）使我们在PMB脱保护后，可以将固定状态下的游离氨基吡唑结合位点进行荧光标记肽的珠上检测。从荧光发射强度的降低，可以通过简单地应用质量作用定律，通过参考曲线计算出各个结合常数。令人高兴的是，即使对于几乎不溶于水的那些配体，也可以定量地监测宿主/客体的复合。
• Aminopyrazole Oligomers for β-SheetStabilization of Peptides
  作者：T. Schrader、P. Rzepecki、M. Wehner、O. Molt、R. Zadmard、K. Harms

  DOI：10.1055/s-2003-41031

  日期：——

  A general concept for the stabilization of β-sheetsby designed artificial ligands is introduced. The ligands have twokey features: they contain acylated 3-aminopyrazoles with a DAD hydrogenbond donor and acceptor pattern, and they were synthesized as oligomersin order to multiply their hydrogen bond interactions with peptidesin the β-sheet conformation. Dimeric aminopyrazoles wereaccessible by reaction of the N1-Boc-protectedaminopyrazole derivative 1 with severalacid dichlorides followed by a standard deprotection procedure withtrifluoroacetic acid. For the oligomers, N1-PMBprotection of new pyrazole amino acids followed by an iterativeextension protocol with peptide coupling using PyClop or Mukaiyama’sreagent led to the target compounds. All protecting groups weresubsequently removed in a final deprotection step with warm trifluoroaceticacid. Two dimeric key compounds 3b and 3f were examined by NMR at various temperatures,in NOESY experiments as well as by X-ray crystallography in orderto elucidate their conformational preference in solution and thesolid state. The emerging picture was the same for all methods: bothligands adopt a flat conformation with a high degree of pre-orientationand the correct DAD pattern for optimal interaction with peptidesin their extended conformation. Aggregation assays with the Prionprotein and the Alzheimer’s peptide Aβ (1-40)show highly promising results for some of the dimeric and oligomericligands at very low concentrations.

  本文介绍了利用设计的人工配体稳定δ-片材的一般概念。这些配体有两个主要特征：它们含有酰化的 3-氨基吡唑，具有 DAD 氢键供体和受体模式；它们被合成为低聚物，以增加它们与δ-片构象中的肽的氢键相互作用。二聚氨基吡唑可通过 N1-Boc 保护的氨基吡唑衍生物 1 与几种二氯酸反应，然后用三氟乙酸进行标准脱保护处理而获得。对于低聚物，对新的吡唑氨基酸进行 N1-PMB 保护，然后使用 PyClop 或 Mukaiyama 试剂与肽偶联进行迭代扩展，最终得到目标化合物。随后，所有的保护基团都在最后一步用温三氟乙酸进行脱保护。对两个二聚关键化合物 3b 和 3f 进行了不同温度下的核磁共振、NOESY 实验和 X 射线晶体学研究，以阐明它们在溶液和固体状态下的构象偏好。所有方法得出的结果都是一样的：两种配体都采用具有高度预取向性的扁平构象和正确的 DAD 模式，以便与扩展构象中的肽发生最佳相互作用。用朊病毒蛋白和阿尔茨海默氏症肽 Aβ (1-40) 进行的聚合试验表明，一些二聚体和寡聚体配体在极低浓度下就能产生很好的效果。
• β-Sheet Ligands in Action:  KLVFF Recognition by Aminopyrazole Hybrid Receptors in Water
  作者：Petra Rzepecki、Thomas Schrader

  DOI：10.1021/ja045558b

  日期：2005.3.9

  Little is known about the precise mechanism of action of beta-sheet ligands, hampered by the notorious solubility problems involved with protein misfolding and amyloid formation. Recently the nucleation site for the pathogenic aggregation of the Alzheimer's peptide was identified as the KLVFF sequence in the central region of Abeta. A combination of two aminopyrazole ligands with di- or tripepticles taken from this key fragment now furnished water-soluble Abeta-specific ligands which allow model investigations in water. A detailed conformational analysis provides experimental evidence for an increased -sheet content induced in the peptide. Strong indications were also found for the peptide backbone recognition via hydrogen bonds plus hydrophobic contributions between aminopyrazole nuclei and Phe residues. The affinity of these new ligands toward the KKLVFF fragment is highly dependent on their sequence and composition from natural and artificial amino acids. Thus, for the first time, detailed insight is gained into the complexation of beta-sheet ligands with model peptices taken directly from Abeta.