6-(2-Hydroxyethyl)methylamino-9-(β-D-ribofuranosyl)purine | 35662-05-6

• 分子结构分类: 有机化合物 - 核苷、核苷酸和类似物 - 嘌呤核苷
• 英文名称: 6-(2-Hydroxyethyl)methylamino-9-(β-D-ribofuranosyl)purine
• 英文别名: N-(3-Hydroxypropyl)adenosine；(2R,3S,4R,5R)-2-(hydroxymethyl)-5-[6-(3-hydroxypropylamino)purin-9-yl]oxolane-3,4-diol
• CAS: 35662-05-6
• 化学式: C₁₃H₁₉N₅O₅
• 分子量: 325.324
• InChiKey: AFTUQDRYZGNMJC-QYVSTXNMSA-N

计算性质

• 辛醇/水分配系数(LogP)：
  -0.2
• 重原子数：
  23
• 可旋转键数：
  6
• 环数：
  3.0
• sp3杂化的碳原子比例：
  0.62
• 拓扑面积：
  146
• 氢给体数：
  5
• 氢受体数：
  9

反应信息

• 作为产物：
  描述：

  6-氯嘌呤核苷 、 3-氨基-1-丙醇 在 三乙胺 作用下， 以 乙醇 为溶剂， 反应 18.0h， 生成 6-(2-Hydroxyethyl)methylamino-9-(β-D-ribofuranosyl)purine
  参考文献：
  名称：

  Adenosine Analogues as Inhibitors of Trypanosoma brucei Phosphoglycerate Kinase:  Elucidation of a Novel Binding Mode for a 2-Amino-N⁶-Substituted Adenosine

  摘要：

  As part of a project aimed at structure-based design of adenosine analogues as drugs against African trypanosomiasis, N-6-, 2-amino-N-6-, and N-2-substituted adenosine analogues were synthesized and tested to establish structure-activity relationships for inhibiting Trypanosoma brucei glycosomal phosphoglycerate kinase (PGK), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), and glycerol-3-phosphate dehydrogenase (GPDH). Evaluation of X-ray structures of parasite PGK, GAPDH, and GPDH complexed with their adenosyl-bearing substrates led us to generate a series of adenosine analogues which would target all three enzymes simultaneously. There was a modest preference by PGK for NG-substituted analogues bearing the 2-amino group. The best compound in this series, 2-amino-N-6-[2 "-(p-hydroxyphenyl)ethyl]adenosine (46b), displayed a 23-fold improvement over adenosine with an IC50 of 130 muM. 2-[[2 "-(p-Hydroxyphenyl)ethyl]amino]adenosine (46c) was a weak inhibitor of T. brucei PGK with an IC50 of 500 muM. To explore the potential of an additive effect that having the N-6 and N-2 substitutions in one molecule might provide, the best ligands from the two series were incorporated into N-6,N-2-disubstituted adenosine analogues to yield N-6-(2 " -phenylethyl)-2-[(2 " -phenylethyl)amino]adenosine (69) as a 30 muM inhibitor of T. brucei PGK which is 100-fold more potent than the adenosine template. In contrast, these series gave no compounds that inhibited parasitic GAPDH or GPDH more than 10-20% when tested at 1.0 mM. A 3.0 Angstrom X-ray structure of a T, brucei PGK/46b complex revealed a binding mode in which the nucleoside analogue was flipped and the ribosyl moiety adopted a syn conformation as compared with the previously determined binding mode of ADP. Molecular docking experiments using QXP and SAS program suites reproduced this "flipped and rotated" binding mode.

  DOI：

  10.1021/jm000287a

文献信息

• Anti-HCV nucleoside derivatives
  申请人：——

  公开号：US20030008841A1

  公开（公告）日：2003-01-09

  The present invention comprises novel and known purine and pyrimidine nucleoside derivatives which have been discovered to be active against hepatitis C virus (HCV). The use of these derivatives for the treatment of HCV infection is claimed as are the novel nucleoside derivatives disclosed herein.

  本发明涉及新颖和已知的嘌呤和嘧啶核苷衍生物，已发现这些衍生物对丙型肝炎病毒（HCV）具有活性。本发明声明利用这些衍生物治疗HCV感染，以及本文所披露的新颖核苷衍生物。
• NUCLEOSIDE DERIVATIVES FOR THE TREATMENT OF HEPATITIS C
  申请人：F. HOFFMANN-LA ROCHE AG

  公开号：EP1315736A2

  公开（公告）日：2003-06-04
• [EN] NUCLEOSIDE DERIVATIVES FOR THE TREATMENT OF HEPATITIS C<br/>[FR] DERIVES DE NUCLEOSIDES
  申请人：——

  公开号：WO2002018404A9

  公开（公告）日：2003-10-02

  [EN] Use of compounds of formula (I), wherein R<1> is hydrogen, hydroxy, alkyl, hydroxyalkyl, alkoxy, halogen, cyano, isocyano or azido; R<2> is hydrogen, hydroxy, alkoxy, chlorine, bromine or iodine; R<3> is hydrogen; or R<2> and R<3> together represent =CH2; or R<2> and R<3> represent fluorine; X is O, s or CH2; a, b, c, d denoting asymmetric carbon atoms each of which is substituted with 4 different substituents; and B signifies a purine base B1 which is connected through the 9-nitrogen of formula (B1), wherein R<4> is hydrogen, hydroxyl, alkyl, alkoxy, alkylthio, aryloxy, arylthio, heterocyclyl, NR<7>R<8>, halogen or SH; R<5> is hydrogen, hydroxy, alkyl, haloalkyl, cycloalkyl, alkoxy, alkylthio, aryl, aryloxy, arylthio, heterocyclyl, heterocyclylamino, halogen, NR<7>R<8>, NHOR<9>, NHNR<7>R<8> or SH; R<6> is hydrogen, hydroxy, alkyl, alkoxy, alkylthio, aryloxy, arylthio, heterocyclyl, NR<7>R<8>, halogen, SH or cyano; R<7> and R<8> are independently of each other hydrogen, alkyl, aryl, hydroxyalkyl, alkenylalkyl, alkynylalkyl, cycloalkyl or acyl; R<9> is hydrogen, alkyl or aryl; or B signifies an oxidised purine base B2 which is connected through the 9-nitrogen of formula (B2), wherein R<4>, R<5> and R<6> are as defined above; or B signifies a purine base B3 which is connected through the 9-nitrogen of formula (B3), wherein R<4> and R<6> are as defined above; R<10> is hydrogen, alkyl or aryl; Y is O, S or NR<11>; R<11> is hydrogen, hydroxy, alkyl, OR<9>, heterocyclyl or NR<7>R<8>; R<7>, R<8> and R<9> are as defined above; or B signifies a pyrimidine base B4 which is connected through the 1-nitrogen of formula (B4), wherein Z is O or S; R<12> is hydrogen, hydroxy, alkyl, alkoxy, haloalkyl, alkylthio, aryl, aryloxy, arylthio, heterocyclyl, heterocyclylamino, halogen, NR<7>R<8>, NHOR<9>, NHNR<7>R<8> or SH; R<13> is hydrogen, alkyl, hydroxyalkyl, alkoxyalkyl, haloalkyl, cycloalkyl or halogen; R<7>, R<8> and R<9> are as defined above; or B signifies a pyrimidine base B5 which is connected through the 1-nitrogen of formula (B5), wherein Y, Z, R<10> are as defined above for the treatment of diseases mediated by the Hepatitis C Virus (HIV) or for the preparation of a medicament for such treatment. The invention is concerned with novel and known purine and pyrimidine nucleoside derivatives, their use as inhibitors of subgenomic Hepatitis C Virus (HCV) RNA replication and pharmaceutical compositions of such compounds.
  [FR] L'invention concerne l'utilisation de composés représentés par la formule (I), dans laquelle R<1> représente hydrogène, hydroxy, alkyle, hydroxyalkyle, alcoxy, halogène, cyano, isocyano ou azido; R<2> représente hydrogène, hydroxy, alcoxy, chlore, brome ou iode; R<3> représente hydrogène; ou R<2> et R<3> représentent ensemble =CH2; ou R<2> et R<3> représentent fluor; X représente O, S ou CH2; a, b, c, d représentant des atomes de carbone asymétriqued dont chacun est subtitué avec 4 substituants différents; et B représente une base purique B1 qui est reliée au moyen du 9-azote représenté par la formule (B1), dans laquelle R<4> représente hydrogène, hydroxy, alkyle, alcoxy, alkylthio, aryloxy, arylthio, hétérocyclyle, NR<7>R<8>, halogène ou SH; R<5> représente hydrogène, hydroxy, alkyle, haloalkyle, cycloalkyle, alcoxy, alkylthio, aryle, aryloxy, arylthio, hétérocyclyle, hétérocyclylamino, halogène, NR<7>R<8>, NHOR<9>, NHNR<7>R<8> ou SH; R<6> représente hydrogène, hydroxy, alkyle, alcoxy, alkylthio, aryloxy, arylthio, hétérocyclyle, NR<7>R<8>, halogène, SH ou cyano; R<7> et R<8> représentent independamment l'un de l'autre hydrogène, alkyle, aryle, hydroxyalkyle, alcénylalkyle, alkynylalkyle, cycloalkyle ou acyle; R<9> représente hydrogène, alkyle ou aryle; ou B représente une base purique oxydée B2 qui est reliée au moyen du 9-azote représenté par la formule (B2), dans laquelle R<4>, R<5> et R<6> sont tels que définis ci-dessus; ou B représente une base purique B3 qui est reliée au moyen du 9-azote représenté par la formule (B3), dans laquelle R<4> et R<6> sont tels que définis ci-dessus; R<10> représente hydrogène, alkyle ou aryle; Y représente O, S ou NR<11>; R<11> représente hydrogène, hydroxy, alkyle, OR<9>, hétérocyclyle ou NR<7>R<8>; R<7>, R<8> et R<9> sont tels que définis ci-dessus; ou B représente une base pyrimidique B4 qui est reliée au moyen du 1-azote représenté par la formule (B4), dans laquelle Z représente O ou S; R<12> représente hydrogène, hydroxy, alkyle, alcoxy, haloalkyle, alkylthio, aryle, aryloxy, arylthio, hétérocyclyle, hétérocyclylamino, halogène, NR<7>R<8>, NHOR<9>, NHNR<7>R<8> ou SH; R<13> représente hydrogène, alkyle, hydroxyalkyle, alcoxyalkyle, haloalkyle, cycloalkyle ou halogène; R<7>, R<8> et R<9> sont tels que définis ci-dessus; ou B représente une base pyrimidique B5 qui est reliée au moyen du 1-azote représenté par la formule (B5), dans laquelle Y, Z, R<10> et R13 sont tels que définis ci-dessus, pour le traitement de maladies à médiation du virus de l'hépatite C (VHC) ou pour la préparation d'un médicament pour un tel traitement. L'invention concerne des dérivés de nucléosides puriques et pyrimidiques connus et nouveaux, ainsi que leur utilisation en tant qu'inhibiteur de la réplication de l'ARN du virus de l'hépatite C (VHC) subgénomique et des compositions pharmaceutiques de tels composés.
• [EN] NUCLEOSIDE DERIVATIVES<br/>[FR] DERIVES DE NUCLEOSIDES
  申请人：HOFFMANN LA ROCHE

  公开号：WO2002018404A2

  公开（公告）日：2002-03-07

  Use of compounds of formula (I), wherein R1 is hydrogen, hydroxy, alkyl, hydroxyalkyl, alkoxy, halogen, cyano, isocyano or azido; R2 is hydrogen, hydroxy, alkoxy, chlorine, bromine or iodine; R3 is hydrogen; or R?2 and R3¿ together represent =CH¿2?; or R?2 and R3¿ represent fluorine; X is O, s or CH¿2?; a, b, c, d denoting asymmetric carbon atoms each of which is substituted with 4 different substituents; and B signifies a purine base B1 which is connected through the 9-nitrogen of formula (B1), wherein R?4¿ is hydrogen, hydroxyl, alkyl, alkoxy, alkylthio, aryloxy, arylthio, heterocyclyl, NR7R8, halogen or SH; R5 is hydrogen, hydroxy, alkyl, haloalkyl, cycloalkyl, alkoxy, alkylthio, aryl, aryloxy, arylthio, heterocyclyl, heterocyclylamino, halogen, NR?7R8, NHOR9, NHNR7R8¿ or SH; R6 is hydrogen, hydroxy, alkyl, alkoxy, alkylthio, aryloxy, arylthio, heterocyclyl, NR7R8, halogen, SH or cyano; R?7 and R8¿ are independently of each other hydrogen, alkyl, aryl, hydroxyalkyl, alkenylalkyl, alkynylalkyl, cycloalkyl or acyl; R9 is hydrogen, alkyl or aryl; or B signifies an oxidised purine base B2 which is connected through the 9-nitrogen of formula (B2), wherein R?4, R5 and R6¿ are as defined above; or B signifies a purine base B3 which is connected through the 9-nitrogen of formula (B3), wherein R?4 and R6¿ are as defined above; R10 is hydrogen, alkyl or aryl; Y is O, S or NR11; R11 is hydrogen, hydroxy, alkyl, OR9, heterocyclyl or NR?7R8; R7, R8 and R9¿ are as defined above; or B signifies a pyrimidine base B4 which is connected through the 1-nitrogen of formula (B4), wherein Z is O or S; R12 is hydrogen, hydroxy, alkyl, alkoxy, haloalkyl, alkylthio, aryl, aryloxy, arylthio, heterocyclyl, heterocyclylamino, halogen, NR?7R8, NHOR9, NHNR7R8¿ or SH; R13 is hydrogen, alkyl, hydroxyalkyl, alkoxyalkyl, haloalkyl, cycloalkyl or halogen; R?7, R8 and R9¿ are as defined above; or B signifies a pyrimidine base B5 which is connected through the 1-nitrogen of formula (B5), wherein Y, Z, R10 are as defined above for the treatment of diseases mediated by the Hepatitis C Virus (HIV) or for the preparation of a medicament for such treatment. The invention is concerned with novel and known purine and pyrimidine nucleoside derivatives, their use as inhibitors of subgenomic Hepatitis C Virus (HCV) RNA replication and pharmaceutical compositions of such compounds.
• Adenosine Analogues as Inhibitors of <i>Trypanosoma </i><i>b</i><i>rucei </i>Phosphoglycerate Kinase:  Elucidation of a Novel Binding Mode for a 2-Amino-N⁶-Substituted Adenosine
  作者：Jerome C. Bressi、Jungwoo Choe、Melinda T. Hough、Frederick S. Buckner、Wesley C. Van Voorhis、Christophe L. M. J. Verlinde、Wim G. J. Hol、Michael H. Gelb

  DOI：10.1021/jm000287a

  日期：2000.11.1

  As part of a project aimed at structure-based design of adenosine analogues as drugs against African trypanosomiasis, N-6-, 2-amino-N-6-, and N-2-substituted adenosine analogues were synthesized and tested to establish structure-activity relationships for inhibiting Trypanosoma brucei glycosomal phosphoglycerate kinase (PGK), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), and glycerol-3-phosphate dehydrogenase (GPDH). Evaluation of X-ray structures of parasite PGK, GAPDH, and GPDH complexed with their adenosyl-bearing substrates led us to generate a series of adenosine analogues which would target all three enzymes simultaneously. There was a modest preference by PGK for NG-substituted analogues bearing the 2-amino group. The best compound in this series, 2-amino-N-6-[2 "-(p-hydroxyphenyl)ethyl]adenosine (46b), displayed a 23-fold improvement over adenosine with an IC50 of 130 muM. 2-[[2 "-(p-Hydroxyphenyl)ethyl]amino]adenosine (46c) was a weak inhibitor of T. brucei PGK with an IC50 of 500 muM. To explore the potential of an additive effect that having the N-6 and N-2 substitutions in one molecule might provide, the best ligands from the two series were incorporated into N-6,N-2-disubstituted adenosine analogues to yield N-6-(2 " -phenylethyl)-2-[(2 " -phenylethyl)amino]adenosine (69) as a 30 muM inhibitor of T. brucei PGK which is 100-fold more potent than the adenosine template. In contrast, these series gave no compounds that inhibited parasitic GAPDH or GPDH more than 10-20% when tested at 1.0 mM. A 3.0 Angstrom X-ray structure of a T, brucei PGK/46b complex revealed a binding mode in which the nucleoside analogue was flipped and the ribosyl moiety adopted a syn conformation as compared with the previously determined binding mode of ADP. Molecular docking experiments using QXP and SAS program suites reproduced this "flipped and rotated" binding mode.