2-氨基-9-[(2R,4R)-2-(羟基甲基)-1,3-二氧戊环-4-基]-3H-嘌呤-6-酮 | 145514-01-8

• 分子结构分类: 有机化合物 - 有机杂环化合物 - 咪唑并嘧啶类
• 中文名称: 2-氨基-9-[(2R,4R)-2-(羟基甲基)-1,3-二氧戊环-4-基]-3H-嘌呤-6-酮
• 英文名称: (-)-β-D-dioxolane guanosine
• 英文别名: (-)-β-D-dioxolane guanine；beta-D-Dioxolane-guanosine；(-)-(2R,4R)-9-[(2-hydroxy-methyl)-1,3-dioxolan-4-yl]guanine；(4-2-Aminopurin-9-yl)-1,3-dioxolane-2-methanol；2-amino-9-[(2R,4R)-2-(hydroxymethyl)-1,3-dioxolan-4-yl]-1H-purin-6-one
• CAS: 145514-01-8
• 化学式: C₉H₁₁N₅O₄
• 分子量: 253.217
• InChiKey: DXNPMWVLIOKPNO-RFZPGFLSSA-N

计算性质

• 辛醇/水分配系数(LogP)：
  -1.9
• 重原子数：
  18
• 可旋转键数：
  2
• 环数：
  3.0
• sp3杂化的碳原子比例：
  0.44
• 拓扑面积：
  124
• 氢给体数：
  3
• 氢受体数：
  6

反应信息

• 作为反应物：
  描述：

  2-氨基-9-[(2R,4R)-2-(羟基甲基)-1,3-二氧戊环-4-基]-3H-嘌呤-6-酮 在 high K_m 5'-nucleotidase 、 5’-肌苷酸 、 5’-三磷酸腺苷 作用下， 以 various solvents 为溶剂， 生成 Phosphoric acid mono-[(2R,4R)-4-(2-amino-6-oxo-1,6-dihydro-purin-9-yl)-[1,3]dioxolan-2-ylmethyl] ester
  参考文献：
  名称：

  Anabolism of amdoxovir: phosphorylation of dioxolane guanosine and its 5′-phosphates by mammalian phosphotransferases

  摘要：

  Amdoxovir [(-)-beta-D-2,6-diaminopurine dioxolane, DAPD], the prodrug of dioxolane guanosine (DXG), is currently in Phase I/II clinical development for the treatment of HIV-1 infection. In this study, we examined the phosphorylation pathway of DXG using 15 purified enzymes from human (8), animal (6), and yeast (1) sources, including deoxyguanosine kinase (dGK), deoxycytidine kinase ;dCK), high K-m 5'-nucleotidase (5'-NT), guanylate (GMP) kinase, nucleoside monophosphate (NMP) kinase, adenylate (AMP) kinase, nucleoside diphosphate (NDP) kinase, 3-phosphoglycerate (3-PG) kinase, creatine kinase, and pyruvate kinase. In addition, the metabolism of C-14-labeled DXG was studied in CEM cells. DXG was not phosphorylated by human dCK, and was a poor substrate for human dGK with a high K-m (7 mM). Human 5'-NT phosphorylated DXG with relatively high efficiency (4.2% of deoxyguanosine). DXG-MP was a substrate for porcine brain GMP kinase with a substrate specificity that was 1% of dGMP. DXG-DP was phosphorylated by all of the enzymes tested, including NDP kinase, 3-PG kinase, creatine kinase, and pyruvate kinase. The BB-isoform of human creatine kinase showed the highest relative substrate specificity (47% of dGDP) for DXG-DP. In CEM cells incubated with 5 muM DXG for 24 h, 0.015 pmole/10(6) cells (similar to7.5 nM) of DXG-TP was detected as the primary metabolite. Our study demonstrated that 5'-nucleotidase, GMP kinase, creatine kinase, and NDP kinase could be responsible for the activation of DXG in vivo. (C) 2004 Elsevier Inc. All rights reserved.

  DOI：

  10.1016/j.bcp.2004.06.019
• 作为产物：
  描述：

  (-)-(2R,4R)-2-amino-9-<2-<<(tert-butyldiphenylsilyl)oxy>methyl>-1,3-dioxolan-4-yl>-6-chloropurine 在 四丁基氟化铵 、 sodium methylate 、 2-巯基乙醇 作用下， 以 四氢呋喃 、 甲醇 为溶剂， 反应 3.0h， 生成 2-氨基-9-[(2R,4R)-2-(羟基甲基)-1,3-二氧戊环-4-基]-3H-嘌呤-6-酮
  参考文献：
  名称：

  1,3-Dioxolanylpurine nucleosides (2R,4R) and (2R,4S) with selective anti-HIV-1 activity in human lymphocytes

  摘要：

  In order to study the structure-activity relationships of dioxolane nucleosides as potential anti-HIV-1 agents, various enantiomers of pure dioxolanylpurine nucleosides were synthesized and evaluated against HIV-1 in human peripheral blood mononuclear cells. The enantiomerically pure key intermediate 1, which was synthesized in nine steps from 1,6-anhydro-beta-D-mannose, was condensed with 6-chloropurine, 6-chloro-2-fluoropurine, and 2,6-dichloropurine in the presence of TMS triflate. The chloro or fluoro substituents were readily converted into amino, N-methylamino, hydroxy, methoxy, thiol, and methylthio under appropriate reaction conditions. Upon evaluation of these dioxolanes, the guanine derivative 24 exhibited the most potent anti-HIV-1 activity without cytotoxicity up to 100 muM in various cells. The decreasing antiviral activity order of beta-isomers was as follows: guanine > 6-chloro-2-aminopurine > 2-fluoroadenine greater-than-or-equal-to adenine greater-than-or-equal-to 2,6-diaminopurine > hypoxanthine > 2-chloroadenine > 6-chloropurine congruent-to N6-methyladenine congruent-to 6-mercaptopurine congruent-to 6-(methylthio)purine.

  DOI：

  10.1021/jm00053a004

文献信息

• Macroheterocyclic nucleoside derivatives and their analogues, production and use thereof
  申请人：Ivachtchenko Alexandre Vasilievich

  公开号：US20180099989A1

  公开（公告）日：2018-04-12

  Nucleosides and nucleotides (nucleos(t)ides) have been in clinical use for almost 50 years and have become cornerstones of treatment for patients with viral infections or cancer. The approval of several additional drugs over the past decade demonstrates that this family still possesses strong potential. Therefore nucleos(t)ide are of great interest as promising chemotherapeutic agents, including: 2′-deoxy-L-uridine (CAS No 31501-19-6), 2′-deoxy-D-uridine (CAS No 951-78-0), telbivudine (CAS No 3424-98-4), zidovudine (AZT, CAS No 30516-87-1), trifluridine (CAS No 70-00-8), clevudine (CAS No 163252-36-6), PSI-6206 (CAS No 863329-66-2), 2′-(5)-2′-chloro-2′-deoxy-2′-fluorouridine (CAS No 1673560-41-2), ND06954 (CAS No 114248-23-6), stavudine (CAS No 3056-17-5), 5-ethynyltavudine (Festinavir, CAS No 634907-30-5), torcitabine (CAS No 40093-94-5), (−)-beta-D-(2R,4R)-dioxolane-thymine (DOT, 1-((2R,4R)-2-(hydroxymethyl)-1,3-dioxolan-4-yl)-5-methyl-2,4 (1H,3H)-pyrimidinedione, CAS No. 127658-07-5), 2-(6-amino-purin-9-yl)-ethanol (CAS No 707-99-3), 2′-C-methylcytidine (CAS No 20724-73-6), PSI-6130 (CAS No 817204-33-4), gemcitabine (CAS No 95058-81-4), 2′-chloro-2′-deoxy-2′-fluorocytidine (CAS No 1786426-19-4), 2′,2′-dichloro-2′-deoxycytidine (CAS No 1703785-65-2), 2′-C-methylcytidine (CAS No 20724-73-6), PSI-6130 (CAS No 817204-33-4), lamivudine (3TC, CAS No 134678-17-4), emtricitabine (CAS No 143491-57-0), 2′-deoxyadenosine (CAS No 958-09-8), 2′-deoxy-β-L-adenosine (CAS No 14365-45-8), 2′-deoxy-4′-C-ethynyl-2-fluoroadenosine (CAS No 865363-93-5), didanosine (CAS No 69655-05-6), entecavir (CAS No 209216-23-9), FMCA (CAS No 1307273-70-6), dioxolane-G (DOG, CAS No 145514-01-8), β-D-2′-deoxy-2′-(R)-fluoro-2′-β-C-methylguanosine (CAS No 817204-45-8), abacavir (ABC, CAS No 136470-78-5), dioxolane-A (DOA, CAS #145514-02-9), [(2R,4R)-4-(6-cyclopropylamino-purin-9-yl)-[1,3]dioxolan-2-yl]-methanol (CAS No 1446751-04-7), amdoxovir (AMDX, CAS No 145514-04-1), (R)-1-(6-amino-purin-9-yl)-propan-2-ol (CAS No 14047-28-0), and [(2S,5R)-5-(6-amino-purin-9-yl)-4-fluoro-2,5-dihydro-furan-2-yl]-methanol. Macroheterocyclic nucleoside derivative and its analogue of the general formula 1 or general formula 2, a stereoisomer, isotope-enriched analogue, pharmaceutically acceptable salt, hydrate, solvate, or crystalline or polymorphic form thereof, wherein: Ar is aryl or hetaryl; R 1 and R 2 are not necessarily the same substituents selected from H, F, Cl, CH 3 , OH; R 3 is H or CH 3 ; X is oxygen or ethanediyl-1,1 (C═CH 2 ); Y is CH(R 4 )(CH 2 ) k , CH(R 4 )(CH 2 ) m C(O)O(CH 2 ) n ; R 4 is H or CH 3 ; k has a value from zero to six; m has a value from zero to two; n has a value of one to four; Q is a radical selected from Q1-Q4; wherein: R 5 is the substituent selected from H, F, Cl, CH 3 , OH; the arrow (→) indicates the location, joined by Q1-Q4.

  核苷和核苷酸（核苷（t）酸）已经在临床上使用了近50年，已成为治疗病毒感染或癌症患者的治疗基石。过去十年批准了几种额外的药物，表明这个家族仍然具有强大的潜力。因此，核苷（t）酸作为有前途的化疗药物具有很大的吸引力，包括：2'-脱氧-L-尿苷（CAS号31501-19-6）、2'-脱氧-D-尿苷（CAS号951-78-0）、替比夫定（CAS号3424-98-4）、阿司匹林（AZT，CAS号30516-87-1）、三氟胸苷（CAS号70-00-8）、克雷胸苷（CAS号163252-36-6）、PSI-6206（CAS号863329-66-2）、2'-(5)-2'-氯-2'-脱氧-2'-氟尿苷（CAS号1673560-41-2）、ND06954（CAS号114248-23-6）、司他夫定（CAS号3056-17-5）、5-乙炔基司他夫定（费司那韦，CAS号634907-30-5）、托西他滨（CAS号40093-94-5）、（-）-β-D-(2R,4R)-二氧杂环己嘧啶（DOT，1-((2R,4R)-2-(羟甲基)-1,3-二氧杂环己-4-基)-5-甲基-2,4(1H,3H)-嘧啶二酮，CAS号127658-07-5）、2-(6-氨基嘌呤-9-基)-乙醇（CAS号707-99-3）、2'-C-甲基胞苷（CAS号20724-73-6）、PSI-6130（CAS号817204-33-4）、吉西他滨（CAS号95058-81-4）、2'-氯-2'-脱氧-2'-氟胞苷（CAS号1786426-19-4）、2',2'-二氯-2'-脱氧胞苷（CAS号1703785-65-2）、2'-C-甲基胞苷（CAS号20724-73-6）、PSI-6130（CAS号817204-33-4）、拉米夫定（3TC，CAS号134678-17-4）、恩替卡韦（CAS号143491-57-0）、2'-脱氧腺苷（CAS号958-09-8）、2'-脱氧-β-L-腺苷（CAS号14365-45-8）、2'-脱氧-4'-C-乙炔基-2-氟腺苷（CAS号865363-93-5）、地达诺辛（CAS号69655-05-6）、恩替卡韦（CAS号209216-23-9）、FMCA（CAS号1307273-70-6）、二氧杂环己胞苷（DOG，CAS号145514-01-8）、β-D-2'-脱氧-2'-(R)-氟-2'-β-C-甲基鸟苷（CAS号817204-45-8）、阿巴卡韦（ABC，CAS号136470-78-5）、二氧杂环己-A（DOA，CAS号145514-02-9）、[(2R,4R)-4-(6-环丙基氨基嘌呤-9-基)-[1,3]二氧杂环己-2-基]-甲醇（CAS号1446751-04-7）、阿姆多氧韦（AMDX，CAS号145514-04-1）、(R)-1-(6-氨基嘌呤-9-基)-丙醇（CAS号14047-28-0）、和[(2S,5R)-5-(6-氨基嘌呤-9-基)-4-氟-2,5-二氢呋喃-2-基]-甲醇。 宏环核苷衍生物及其一般式1或一般式2的类似物，立体异构体，同位素富集类似物，药学上可接受的盐，水合物，溶剂合物，或其结晶或多形式， 其中： Ar是芳基或杂芳基； R 1 和R 2 不一定相同，选自H，F，Cl，CH 3 ，OH的取代基； R 3 是H或CH 3 ； X是氧或乙烯二基-1,1（C═CH 2 ）； Y是CH(R 4 )(CH 2 ) k ，CH(R 4 )(CH 2 ) m C(O)O(CH 2 ) n ； R 4 是H或CH 3 ； k的值从零到六； m的值从零到二； n的值从一到四； Q是从Q1-Q4中选择的基团； 其中：R 5 是选自H，F，Cl，CH 3 ，OH的取代基； 箭头（→）表示位置，由Q1-Q4连接。
• Nucleotide mimics and their prodrugs
  申请人：——

  公开号：US20040059104A1

  公开（公告）日：2004-03-25

  The present invention relates to nucleoside diphosphate mimics and nucleoside triphosphate mimics, which contain diphosphate or triphosphate moiety mimics and optionally sugar-modifications and/or base-modifications. The nucleotide mimics of the present invention, in a form of a pharmaceutically acceptable salt, a pharmaceutically acceptable prodrug, or a pharmaceutical formulation, are useful as antiviral, antimicrobial, and anticancer agents. The present invention provides a method for the treatment of viral infections, microbial infections, and proliferative disorders. The present invention also relates to pharmaceutical compositions comprising the compounds of the present invention optionally in combination with other pharmaceutically active agents.

  本发明涉及核苷二磷酸模拟物和核苷三磷酸模拟物，其中包含二磷酸或三磷酸基团模拟物，以及可选的糖修饰和/或碱基修饰。本发明的核苷酸模拟物，以药学上可接受的盐、药学上可接受的前药或药物配方的形式，可用作抗病毒、抗微生物和抗癌剂。本发明提供了一种治疗病毒感染、微生物感染和增生性疾病的方法。本发明还涉及包含本发明化合物的药物组合物，可选地与其他药理活性剂结合。
• Synthesis, antiviral activity, and stability of nucleoside analogs containing tricyclic bases
  作者：Franck Amblard、Emilie Fromentin、Mervi Detorio、Alexander Obikhod、Kimberly L. Rapp、Tamara R. McBrayer、Tony Whitaker、Steven J. Coats、Raymond F. Schinazi

  DOI：10.1016/j.ejmech.2009.04.003

  日期：2009.10

  A series of 3,9-dihydro-9-oxo-5H-imidazo[1,2-A]purine nucleosides (tricylic nucleosides) were synthesized from 9-[4-α-(hydroxymethyl)cyclopent-2-ene-1-α-yl]guanine (CBV) 5, (−)-β-D-(2R,4R)-1,3-dioxolane-guanosine (DXG) 6, 3′-azido-3′-deoxy-guanosine (AZG) 7, and 2′-C-methylguanosine 8. Their in vitro activity against HIV and HCV was evaluated and correlated to their ability to degrade to their purine

  以9-[4-α-(羟甲基)环戊-2-烯-1为原料合成了一系列3,9-dihydro-9-oxo-5 H - imidazo [1,2- A ]嘌呤核苷(三环核苷) -α-基]鸟嘌呤 (CBV) 5 , (-)-β-D-(2 R ,4 R )-1,3-二氧戊环-鸟苷 (DXG) 6 , 3'-叠氮基-3'-脱氧-鸟苷(AZG) 7和 2'- C-甲基鸟苷8。他们对 HIV 和 HCV 的体外活性进行了评估，并与它们降解为嘌呤对应物的能力相关联。
• [EN] PHOSPHORAMIDATE NUCLEOSIDE PRODRUG FOR TREATING VIRAL DISEASES AND CANCER, PROCESSES FOR THEIR PREPARATION AND THEIR USE<br/>[FR] PROMÉDICAMENT NUCLÉOSIDE PHOSPHORAMIDATE DESTINÉ AU TRAITEMENT DES MALADIES VIRALES ET DU CANCER, LEURS PROCÉDÉS DE PRÉPARATION ET LEUR UTILISATION
  申请人：IVACHTCHENKO ALEXANDRE VASILIEVICH

  公开号：WO2018022221A1

  公开（公告）日：2018-02-01

  The present invention pertains to chemotherapeutic agents and their use for treating viral and cancerous diseases. These compounds are inhibitors of HCV NS5B polymerase, HBV DNA polymerase and, HIV-1 reverse transcriptase (RT) inhibitor, and for treatment of hepatitis B and C infection in mammals. These compounds are also of interest for the treatment of cancer. The phosphoramidate nucleoside prodrug of the general formula (1), a stereoisomer, isotope-enriched analogue, pharmaceutically acceptable salt, hydrate, solvate, or crystalline or polymorphic form thereof, formula (1) wherein: Ar is aryl or hetaryl; R1 is H or CH3, R2 is the substituent selected from OCH2CH=CH2, OCH2CH≡CH, OCH2CH2CH2OCH3, formula (2), formula (3) or formula (4), R3 is H or CH3; R4 is OH, OR5, NR6R7; R5 is C1-C4-alkyl; R6 and R7 are not necessarily the same substituents selected from H or CH3, Z = O, or NH; an arrow (→) indicates the place of substituent connection; Nuc is formula (5) or (6); R8 and R9 are not necessarily the same substituents selected from H, F, Cl, CH3 or OH provided when continuous line and its accompanying dotted line ( ) together are the single carbon-carbon (C-C) bond or R8 and R9 are hydrogen provided when continuous line and its accompanying dotted line ( ) together are the double carbon-carbon bond (C=C); R10 is the substituent selected from R10.1- R10.5; R10.1 R10.2 R10.4 R10.5 ; R11 is the substituent selected from H, F, CI, CH3, or CF3; R12 is hydrogen, C1-C4-alkyl or C3-C6-cycloalkyl; X is oxygen or ethanediyl-1,1 (C=CH2); Y is O, S, CH2, or HO-CH group provided when continuous line and its accompanying dotted line (formula 7) together are the single carbon-carbon (C-C) bond or Y is CH group provided when continuous line and its accompanying dotted line (formula 7) together are the double carbon-carbon bond (C=C), and compound of the general formula (1), stereoisomers, isotope-enriched analogues, pharmaceutically acceptable salts, hydrates, solvates, or crystalline or polymorphic forms thereof, wherein: Ar is aryl or hetaryl; R1 is H or CH3; R2 is isopropyl; Nuc is formula (8), (9) or (10).

  本发明涉及化疗药物及其用于治疗病毒性和癌症疾病的用途。这些化合物是HCV NS5B聚合酶、HBV DNA聚合酶和HIV-1逆转录酶（RT）抑制剂，用于治疗哺乳动物中的乙型和丙型肝炎感染。这些化合物也对癌症治疗具有兴趣。通用式（1）的磷酰胺核苷前药的立体异构体、同位素富集类似物、药学上可接受的盐、水合物、溶剂合物或晶体或多形式，式（1）其中：Ar为芳基或杂芳基；R1为H或CH3，R2为从OCH2CH=CH2、OCH2CH≡CH、OCH2CH2CH2OCH3、式（2）、式（3）或式（4）中选择的取代基，R3为H或CH3；R4为OH、OR5、NR6R7；R5为C1-C4-烷基；R6和R7不一定相同，选择自H或CH3的取代基，Z=O或NH；箭头（→）表示取代基连接的位置；Nuc为式（5）或（6）；R8和R9不一定相同，选择自H、F、Cl、CH3或OH，提供当连续线及其相应的虚线（）一起为单碳-碳（C-C）键时，或R8和R9为氢，提供当连续线及其相应的虚线（）一起为双碳-碳键（C=C）时；R10为从R10.1-R10.5中选择的取代基；R10.1 R10.2 R10.4 R10.5；R11为从H、F、Cl、CH3或CF3中选择的取代基；R12为氢、C1-C4-烷基或C3-C6-环烷基；X为氧或乙烯二基-1,1（C=CH2）；Y为O、S、CH2或HO-CH基，提供当连续线及其相应的虚线（式7）一起为单碳-碳（C-C）键时，或Y为CH基，提供当连续线及其相应的虚线（式7）一起为双碳-碳键（C=C）时，以及通用式（1）的化合物、立体异构体、同位素富集类似物、药学上可接受的盐、水合物、溶剂合物或晶体或多形式，其中：Ar为芳基或杂芳基；R1为H或CH3；R2为异丙基；Nuc为式（8）、（9）或（10）。
• [EN] NOVEL PHOSPH(ON)ATE- AND SULF(ON)ATE-BASED PHOSPHATE MODIFIED NUCLEOSIDES USEFUL AS SUBSTRATES FOR POLYMERASES AND AS ANTIVIRAL AGENTS<br/>[FR] NOUVEAUX NUCLÉOSIDES MODIFIÉS AVEC UN PHOSPHATE, À BASE DE PHOSPH(ON)ATE ET DE SULF(ON)ATE, UTILES COMME SUBSTRATS POUR LES POLYMÉRASES ET COMME AGENTS ANTIVIRAUX
  申请人：UNIV LEUVEN KATH

  公开号：WO2011069688A1

  公开（公告）日：2011-06-16

  This invention provides phosphate-modified nucleosides represented by the structural formula ( I ): wherein W is O or S, and wherein B, R1; R3 and R2. are as defined herein. These compounds are useful as substrates for DNA/RNA polymerases, and as anti-viral agents in particular against HIV-1.

  这项发明提供了由结构式（I）表示的磷酸酯修饰核苷，其中W为O或S，B、R1、R3和R2的定义如本文所述。这些化合物可作为DNA/RNA聚合酶的底物使用，特别是作为抗HIV-1的抗病毒药物。