but-3-enyl diphosphate

• 分子结构分类: 有机化合物 - 有机氧化合物 - 有机含氧阴离子化合物
• 英文名称: but-3-enyl diphosphate
• 英文别名: But-3-enyl phosphono hydrogen phosphate
• 化学式: C₄H₁₀O₇P₂
• 分子量: 232.067
• InChiKey: HSLGWXWEYAQZFU-UHFFFAOYSA-N

计算性质

• 辛醇/水分配系数(LogP)：
  -1.5
• 重原子数：
  13
• 可旋转键数：
  6
• 环数：
  0.0
• sp3杂化的碳原子比例：
  0.5
• 拓扑面积：
  113
• 氢给体数：
  3
• 氢受体数：
  7

反应信息

• 作为反应物：
  描述：

  farnesyl pyrophosphate 、 but-3-enyl diphosphate 在 Tris-HCl buffer 、 Micrococcus luteus B-P 26 hexaprenyl diphosphate synthase 、 magnesium chloride 、 acid phosphatase 作用下， 反应 24.0h， 生成 (2E,6E,10E)-7,11,15-trimethylhexadeca-2,6,10,14-tetraen-1-ol
  参考文献：
  名称：

  Artificial substrates of medium-chain elongating enzymes, hexaprenyl- and heptaprenyl diphosphate synthases

  摘要：

  We examined the reactivity of 3-alkyl group homologues of farnesyl diphosphate or isopentenyl diphosphate for medium-chain prenyl diphosphate synthases, hexaprenyl diphosphate- or heptaprenyl diphosphate synthase. But-3-enyl diphosphate, which lacks the methyl group at the 3-position of isopentenyl diphosphate, condensed only once with farnesyl diphosphate to give E-norgeranylgeranyl diphosphate by the action of either enzyme. However, norfarnesyl diphosphate was never accepted as an allylic substrate at all. 3-Ethylbut-3-enyl diphosphate also reacted with farnesyl diphosphate giving a mixture of (all-E)-3-ethyl7,11,15-trimethylhexadeca-2,6,10,14-tetraenyl- and (all-E)-3,7-diethyl-11,15,19-trimethylicosa-2,6,10,14,18-pentaenyl diphosphates by hexaprenyl diphosphate synthase. On the other hand, heptaprenyl diphosphate synthase reaction of 3-ethylbut-3-enyl diphosphate with farnesyl diphosphate gave only (all-E)-3-ethyl-7,11,15-trimethylhexadeca-2,6,10,14-tetraenyl diphosphate. (C) 2001 Elsevier Science Ltd. All rights reserved.

  DOI：

  10.1016/s0960-894x(01)00391-2
• 作为产物：
  描述：

  3-丁烯-1-醇 在 isopentenyl phosphate kinase from Methanocaldococcus jannaschii 、 Escherichia coli hydroxyethylthiazole kinase 、 phosphoenolpyruvic acid monopotassium salt 、 5’-三磷酸腺苷 作用下， 以 aq. buffer 为溶剂， 反应 16.0h， 生成 but-3-enyl diphosphate
  参考文献：
  名称：

  萜烯及其类似物的模块化化学酶促合成。

  摘要：

  非天然萜类化合物具有作为药物和农用化学品的潜力。然而，它们的化学合成通常是长的，复杂的，并且不易于大规模生产。在这里，我们报告了一种模块化的化学酶法，可以从以定量产量产生的二磷酸化前体中合成萜烯类似物。通过添加异戊二烯基转移酶，法呢基二磷酸（2E，6E）-FDP和（2Z，6Z）-FDP的分离率超过80％。还实现了14,15-二甲基-FDP，12-甲基-FDP，12-羟基-FDP，均-FDP和15-甲基-FDP的合成。这些改性的二磷酸酯与萜烯合酶一起使用，以生产非天然的倍半萜类化学信息素（S）-14,15-二甲基Germacrene D和（S）-12-甲基Germacrene D以及二氢青蒿素醛。

  DOI：

  10.1002/anie.202001744

文献信息

• Probing the Substrate Promiscuity of Isopentenyl Phosphate Kinase as a Platform for Hemiterpene Analogue Production
  作者：Sean Lund、Taylor Courtney、Gavin J. Williams

  DOI：10.1002/cbic.201900135

  日期：2019.9.2

  alcohols into pyrophosphates that could be coupled to downstream isoprenoid biosynthesis. To be successful, each kinase in this pathway should be permissive of a broad range of substrates. For the first time, we have probed the promiscuity of the second enzyme in the ADH pathway-isopentenyl phosphate kinase from Thermoplasma acidophilum-towards a broad range of acceptor monophosphates. Subsequently, we evaluate

  类异戊二烯是一类广泛的天然产物，用途广泛。由于在本质上仅提供了两个用于类异戊二烯生物合成的半萜烯构建基，所以用于制造类异戊二烯及其新的自然衍生物的合成生物学方法受到限制。为了解决这一局限性，人工化学酶促途径（例如依赖酒精的半萜（ADH）途径）可利用连续的激酶将外源性醇转化为焦磷酸，然后再将其与下游的类异戊二烯生物合成相结合。为获得成功，该途径中的每种激酶应允许广泛的底物。首次，我们检测了ADH途径中的第二种酶-嗜酸嗜热菌的异戊烯基磷酸激酶向广泛范围的受体单磷酸的混杂。
• Specificity of geranylgeranyl diphosphate synthase for homoallylic substrate analogs
  作者：Norimasa Ohya、Takumi Ichijo、Hana Sato、Takeshi Nakamura、Saki Yokota、Hiroshi Sagami、Masahiko Nagaki

  DOI：10.1016/j.molcatb.2015.07.006

  日期：2015.10

  reaction with the allylic substrate geranyl diphosphate (GPP) that is catalyzed by GGPPase. GGPPase catalyzed the reaction of GPP with 3-desmethylisopentenyl diphosphate (but-3-enyl diphosphate) to yield 3-desmethylfarnesyl diphosphate (12.1%), as well as the reaction of GPP with 3-ethylbut-3-enyl diphosphate or 3-propylbut-3-enyl diphosphate to yield 3-ethylfarnesyl diphosphate (46.9%) or 3-propylfarnesyl

  这项研究的目的是确定智人香叶基香叶基香叶基二磷酸合酶（GGPPase）对异戊烯基二磷酸（IPP）类似物的底物特异性，以利于将其应用于有机合成技术，以研究异戊二烯链延长酶。为此，我们使用在3位含有不同烷基侧链的IPP类似物2a-d作为与GGPPase催化的烯丙基底物香叶基二磷酸（GPP）缩合反应的底物。GGPPase催化GPP与3-去甲基异戊烯基二磷酸（but-3-enyl diphosphate）的反应生成3-desmethylfarnesyl diphosphate（12.1％），以及GPP与3-乙基丁-3-烯基二磷酸或3-丙基丁酯的反应-3-烯基二磷酸酯，生成3-乙基法呢基二磷酸酯（46.9％）或3-丙基法呢基二磷酸酯（22.6％），分别。然而，当将3-丁基丁-3-烯基二磷酸酯用作底物时，未检测到反应产物。
• Characterization of Thermophilic Archaeal Isopentenyl Phosphate Kinases
  作者：Mo Chen、C. Dale Poulter

  DOI：10.1021/bi9017957

  日期：2010.1.12

  Archaea synthesize isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), the essential building blocks of isoprenoid compounds, from mevalonate (MVA). However, an analysis of the genomes of several members of the Archaea failed to identify genes for the enzymes required to convert phosphomevalonate (PM) to IPP In eukaryotes. The recent discovery of an isopentenyl kinase (IPK) in Methanocaldococcus jannaschii (MJ) Suggests a new variation of the MVA pathway where PM is decarboxylated to give isopentenyl phosphate (IP), which is phosphorylated to produce IPP. A blast search using the MJ protein as a probe revealed a subfamily of amino acid kinases that include the fosfomycin resistance protein fomA, which deactivates the antibiotic by phosphorylation of its phosphonate residue in a reaction similar to the conversion of IP to IPP. IPK genes were cloned from two organisms identified in the search, Methanothermobacter thermautotrophicus (MTH) and Thermoplasma acidophilum (THA), and the His-tagged recombinant proteins were purified by Ni-NTA chromatography. The enzymes catalyze the reversible phosphorylation of IP by ATP, K-cq = 6.3 +/- 1. The catalytic efficiencies (V/K) of the proteins were similar to 2 x 10(6) M-1 s(-1). In the reverse direction, ADP wits a substrate inhibitor for THA IPK, K-i(ADP) = 58 +/- 6 mu M, but not for MTH IPK. Both enzymes were active over a broad range of pH and temperature. Five compounds, dimethylallyl phosphate, isopentenyl thiolophosphate, 1-butyl phosphate, 3-buten-1-yl phosphate, and geranyl phosphate, were evaluated as alternative substrates for the MTH and THA IP kinases. All of the compounds were phosphorylated, although the catalytic efficiency was low for geranyl phosphate.
• Modular Chemoenzymatic Synthesis of Terpenes and their Analogues
  作者：Luke A. Johnson、Alice Dunbabin、Jennifer C. R. Benton、Robert J. Mart、Rudolf K. Allemann

  DOI：10.1002/anie.202001744

  日期：2020.5.25

  amenable to large-scale production. Herein, we report a modular chemoenzymatic approach to synthesize terpene analogues from diphosphorylated precursors produced in quantitative yields. Through the addition of prenyl transferases, farnesyl diphosphates, (2E,6E)-FDP and (2Z,6Z)-FDP, were isolated in greater than 80 % yields. The synthesis of 14,15-dimethyl-FDP, 12-methyl-FDP, 12-hydroxy-FDP, homo-FDP

  非天然萜类化合物具有作为药物和农用化学品的潜力。然而，它们的化学合成通常是长的，复杂的，并且不易于大规模生产。在这里，我们报告了一种模块化的化学酶法，可以从以定量产量产生的二磷酸化前体中合成萜烯类似物。通过添加异戊二烯基转移酶，法呢基二磷酸（2E，6E）-FDP和（2Z，6Z）-FDP的分离率超过80％。还实现了14,15-二甲基-FDP，12-甲基-FDP，12-羟基-FDP，均-FDP和15-甲基-FDP的合成。这些改性的二磷酸酯与萜烯合酶一起使用，以生产非天然的倍半萜类化学信息素（S）-14,15-二甲基Germacrene D和（S）-12-甲基Germacrene D以及二氢青蒿素醛。
• Artificial substrates of medium-chain elongating enzymes, hexaprenyl- and heptaprenyl diphosphate synthases
  作者：Masahiko Nagaki、Kosei Kimura、Hiroaki Kimura、Yuji Maki、Eiji Goto、Tokuzo Nishino、Tanetoshi Koyama

  DOI：10.1016/s0960-894x(01)00391-2

  日期：2001.8

  We examined the reactivity of 3-alkyl group homologues of farnesyl diphosphate or isopentenyl diphosphate for medium-chain prenyl diphosphate synthases, hexaprenyl diphosphate- or heptaprenyl diphosphate synthase. But-3-enyl diphosphate, which lacks the methyl group at the 3-position of isopentenyl diphosphate, condensed only once with farnesyl diphosphate to give E-norgeranylgeranyl diphosphate by the action of either enzyme. However, norfarnesyl diphosphate was never accepted as an allylic substrate at all. 3-Ethylbut-3-enyl diphosphate also reacted with farnesyl diphosphate giving a mixture of (all-E)-3-ethyl7,11,15-trimethylhexadeca-2,6,10,14-tetraenyl- and (all-E)-3,7-diethyl-11,15,19-trimethylicosa-2,6,10,14,18-pentaenyl diphosphates by hexaprenyl diphosphate synthase. On the other hand, heptaprenyl diphosphate synthase reaction of 3-ethylbut-3-enyl diphosphate with farnesyl diphosphate gave only (all-E)-3-ethyl-7,11,15-trimethylhexadeca-2,6,10,14-tetraenyl diphosphate. (C) 2001 Elsevier Science Ltd. All rights reserved.