(1S,2R)-1-benzyloxy-2-benzyloxymethylcyclopent-3-ene | 191480-69-0

• 分子结构分类: 有机化合物 - 苯类化合物 - 苯和取代衍生物
• 英文名称: (1S,2R)-1-benzyloxy-2-benzyloxymethylcyclopent-3-ene
• 英文别名: (1S.2R)-1-Benzyloxy-2-(benzyloxymethyl)-3-cyclopentene；[(1R,5S)-5-phenylmethoxycyclopent-2-en-1-yl]methoxymethylbenzene
• CAS: 191480-69-0
• 化学式: C₂₀H₂₂O₂
• 分子量: 294.393
• InChiKey: RCWWCVLXNCRBOO-UXHICEINSA-N

物化性质

• 沸点：
  401.9±40.0 °C(Predicted)
• 密度：
  1.09±0.1 g/cm3(Predicted)

计算性质

• 辛醇/水分配系数(LogP)：
  3.9
• 重原子数：
  22
• 可旋转键数：
  7
• 环数：
  3.0
• sp3杂化的碳原子比例：
  0.3
• 拓扑面积：
  18.5
• 氢给体数：
  0
• 氢受体数：
  2

反应信息

• 作为反应物：
  描述：

  (1S,2R)-1-benzyloxy-2-benzyloxymethylcyclopent-3-ene 在 sodium hydroxide 、 偶氮二甲酸二异丙酯 、 Hg(II) trifluoroacetate 、 三氯化硼 、 三苯基膦 作用下， 以 甲醇 、 乙醚 、 二氯甲烷 、 水 、 乙腈 为溶剂， 反应 21.0h， 生成 (+)-1-<(1R,3S,4R)-3-hydroxy-4-(hydroxymethyl)cyclopentyl>-5-<(E)-2-bromovinyl>-1H,3H-pyrimidine-2,4-dione
  参考文献：
  名称：

  New Convergent Synthesis of Carbocyclic Nucleoside Analogues

  摘要：

  将描述两种趋同的方法用于合成碳环核苷类似物。这两种方法均以从烷基化环戊二烯中选择性制备的立体化学纯环戊醇8为起点。通过这些方法，已合成出dT、FdU和BVdU的碳环类似物。此外，还将展示一种例子中转化为环Sal-前核苷酸及相应核苷酸的过程。

  DOI：

  10.1055/s-2003-41455
• 作为产物：
  描述：

  (1S,2S)-2-((isopropoxydimethylsilyl)methyl)cyclopent-3-enol 在 potassium fluoride 、 双氧水 、 sodium hydride 、 potassium hydrogencarbonate 作用下， 以 四氢呋喃 、 甲醇 、 mineral oil 为溶剂， 反应 19.0h， 生成 (1S,2R)-1-benzyloxy-2-benzyloxymethylcyclopent-3-ene
  参考文献：
  名称：

  Synthesis and biological evaluation of phosphoramidate prodrugs of two analogues of 2-deoxy-d-ribose-1-phosphate directed to the discovery of two carbasugars as new potential anti-HIV leads

  摘要：

  2-Deoxy-alpha-D-ribose-1-phosphate is of great interest as it is involved in the biosynthesis and/or catabolic degradation of several nucleoside analogues of biological and therapeutic relevance. However due to the lack of a stabilising group at its 2-position, it is difficult to synthesize stable prodrugs of this compound. In order to overcome this lack of stability, the synthesis of carbasugar analogues of 2-deoxyribose-1-phosphate was envisioned. Herein the preparation of a series of prodrugs of two carbocyclic analogues of 2-deoxyribose-1-phosphate using the phosphoramidate ProTide technology, along with their biological evaluation against HIV and cancer cell proliferation, is reported. (c) 2014 Elsevier Ltd. All rights reserved.

  DOI：

  10.1016/j.bmc.2014.12.039

文献信息

• Asymmetric Synthesis of Polyhydroxylated <i>N</i>-Alkoxypiperidines by Ring-Closing Double Reductive Amination: Facile Preparation of Isofagomine and Analogues
  作者：Gaëlle Malik、Xavier Guinchard、David Crich

  DOI：10.1021/ol203213f

  日期：2012.1.20

  A de novo synthesis of novel polyhydroxylated N-alkoxypiperidines based on the ring-closing double reductive amination of 1,5-dialdehydes, obtained by oxidative cleavage of cyclopentene derivatives, with O-substituted hydroxylamines is reported. Isofagomine was accessed by cleavage of the N–O bond of an N-alkoxypiperidine.

  报道了一种新的多羟基化的N-烷氧基哌啶的从头合成，该合成是基于通过用O-取代的羟胺对环戊烯衍生物进行氧化裂解而得到的1，5-二醛的双环还原胺化。通过切割N-烷氧基哌啶的N-O键可访问异黄花碱。
• NO Bond as a Glycosidic-Bond Surrogate: Synthetic Studies Toward Polyhydroxylated<i>N</i>-Alkoxypiperidines
  作者：Gaëlle Malik、Angélique Ferry、Xavier Guinchard、Thierry Cresteil、David Crich

  DOI：10.1002/chem.201202374

  日期：2013.2.4

  isofagomine, 3‐deoxyisofagomine, and numerous other N‐alkoxy analogues. The barrier to inversion in these polyhydroxylated N‐alkoxypiperidine derivatives was found by variable‐temperature NMR methods to be approximately 15 kcal mol−1. With the exception of N‐hydroxyisofagomine itself, none of the compounds prepared showed significant inhibitory activity against sweet almond β‐glucosidase.

  通过将高度官能化的1,5-二醛与各种羟胺进行双环双还原胺化（DRA），合成了一系列新型的多羟基N-烷氧基哌啶。所需的基于糖的二醛是由环戊二烯化钠分七步高效制备的。已经为DRA开发了两步协议。脱保护后，它导致了异黄酮，3-脱氧异氟谷氨酸和许多其他N-烷氧基类似物。通过变温NMR方法发现这些多羟基化的N-烷氧基哌啶衍生物的转化障碍约为15 kcal mol -1。除了N-hydroxyisofagomine本身，所制备的化合物均未显示出对甜杏仁β-葡萄糖苷酶的显着抑制活性。
• Divergent Synthesis and Biological Evaluation of Carbocyclic α-, <i>iso</i>- and 3′-<i>epi</i>-Nucleosides and their Lipophilic Nucleotide Prodrugs
  作者：Chris Meier、Olaf Ludek、Tobias Krämer、Jan Balzarini

  DOI：10.1055/s-2006-926411

  日期：2006.4

  A new divergent approach towards carbocyclic α-, iso- and 3′-epi-nucleosides starting from enantiomerically pure (1S,2R)-2-benzyloxymethylcyclopent-3-enol (5) is described. In the key step, isomeric cyclopentanols were condensed with a N3-protected pyrimidine nucleobase using a modified Mitsunobu protocol. Moreover, the conversion into the cycloSal-pronucleotides and the effect of the orientation of the nucleobase on anti-HIV activity are reported.

  报道了一种从手性纯的(1S,2R)-2-苄氧甲基环戊-3-烯醇(5)出发合成碳环α-、异-和3′-表-核苷的新分岔方法。在关键步骤中，异构环戊醇与N3保护的嘧啶核碱通过改进的Mitsunobu反应进行缩合。此外，还报道了其转化为环硫酸核苷前体的过程以及核碱取向对HIV抑制活性的影响。
• Synthesis and Analysis of Oligonucleotides Containing Abasic Site Analogues
  作者：Haidong Huang、Marc M. Greenberg

  DOI：10.1021/jo702614p

  日期：2008.4.1

  to selectively incorporate nucleotides opposite them. However, it was not possible to determine the structural basis for this molecular recognition from these experiments. A group of oligonucleotides containing analogues of the AP and L lesions were synthesized and characterized as probes to gain insight into the structural basis for the distinct effect of 2-deoxyribonolactone on replication. These molecules

  DNA 损伤导致糖苷键 (AP) 的正式水解和几个氧化的脱碱基损伤形成脱碱基位点。先前对 AP 位点的研究表明，在大肠杆菌中约80% 的复制事件中，DNA 聚合酶优先掺入与它们相对的 dA. 这些结果与 AP 位点是无指导性病变的假设一致，因为没有 Watson-Crick 碱基，其旁路遵循“A 规则”。最近对氧化脱碱基损伤 2-脱氧核糖内酯 (L) 的复制研究表明，DNA 聚合酶在绕过它时不应用 A 规则并结合大量与 L 相对的 dG。这些研究表明脱碱基位点，例如L 确实引导聚合酶选择性地掺入与其相对的核苷酸。然而，无法从这些实验中确定这种分子识别的结构基础。合成了一组包含 AP 和 L 病变类似物的寡核苷酸，并将其表征为探针，以深入了解 2-脱氧核糖内酯对复制的独特影响的结构基础。
• Properties of Oligonucleotide with Phenyl-Substituted Carbocyclic Nucleoside Analogs for the Formation of Duplex and Triplex DNA
  作者：Tamer Nasr、Yosuke Taniguchi、Tomoko Takaki、Hidenori Okamura、Shigeki Sasaki

  DOI：10.1080/15257770.2012.737970

  日期：2012.12

  estimation of the oligodeoxynucleotides incorporating 10 for duplex and triplex formation, the carbocyclic nucleoside analog 10 did not show the stabilizing effect for duplex formation; on the other hand, it stabilized the triplex. Therefore, the skeleton of the phenyl-substituted carbocyclic nucleoside analog 10 may be a platform for the formation of stable triplex DNA.

  （1S，3S，4R）-1-苯基-1-胸苷-3-羟基-4-羟基甲基环戊烷（10）及其类似物被合成，并掺入寡脱氧核苷酸中，并对其性质进行评估以形成双链和三链DNA 。将已知的手性环戊酮衍生物转化为相应的酮亚胺磺酰胺衍生物，对其进行立体选择性PhLi加成。水解形成的磺酰胺以提供伯氨基，在其上构建胸腺嘧啶部分。除去苄基保护基以形成在碳环骨架的1'位置具有苯基和胸腺嘧啶单元的核苷类似物（10）。在估计包含10个双链和三链体形成的寡脱氧核苷酸时，碳环核苷类似物10对双链体形成没有稳定作用；另一方面，它稳定了三重结构。因此，苯基取代的碳环核苷类似物10的骨架可以是形成稳定的三链DNA的平台。