Circular Dichroism of Neutral Zinc Porphyrin–Oligonucleotide Conjugates Modified with Flexible Linker
作者:Akira Onoda、Masahiro Igarashi、Satoshi Naganawa、Kiyomi Sasaki、Shinya Ariyasu、Takeshi Yamamura
DOI:10.1246/bcsj.82.1280
日期:2009.10.15
Neutral zinc porphyrin containing flexible alkyl linker, 5-[4-(5-hydroxypentyloxy)phenyl]-10,15,20-tri-p-tolylporphyrinatozinc, was attached to the 5′ ends of 20- and 30-bp oligodeoxynucleotides (ODN) by solid-phase synthesis. Zinc porphyrin-modified double-stranded DNA (dsDNAs), which included dsDNAs with porphyrin moieties on one end and on both ends (ZnPor–ds20, ds20–ZnPor, ZnPor–ds20–ZnPor, ZnPor–ds30, ds30–ZnPor, and ZnPor–ds30–ZnPor), were successfully prepared and were analyzed by variable-temperature UV–vis spectroscopy and CD measurements to elucidate the interaction behavior of the porphyrin ring. Detailed investigation revealed that the zinc porphyrin–DNA conjugates exhibited intra-duplex porphyrin–ODN interaction in a low-salt condition and inter-duplex porphyrin–porphyrin interaction in a high-salt condition.
含有柔性烷基接头 5-[4-(5-羟基戊氧基)苯基]-10,15,20-三对甲苯基卟啉锌的中性锌卟啉连接到 20-和 30-bp 寡脱氧核苷酸 (ODN) 的 5' 末端)通过固相合成。锌卟啉修饰的双链 DNA (dsDNA),包括一端和两端均带有卟啉部分的 dsDNA(ZnPor–ds20、ds20–ZnPor、ZnPor–ds20–ZnPor、ZnPor–ds30、ds30–ZnPor 和 ZnPor –ds30–ZnPor)已成功制备,并通过变温紫外可见光谱和圆二色测量进行分析,以阐明卟啉环的相互作用行为。详细研究表明,锌卟啉-DNA 缀合物在低盐条件下表现出双链体内卟啉-ODN 相互作用,在高盐条件下表现出双链体间卟啉-卟啉相互作用。