Pyrene-Labeled Base-Discriminating Fluorescent DNA Probes for Homogeneous SNP Typing
摘要:
This paper describes the design of novel base-discriminating fluorescent (BDF) nucleobases and their application to single nucleotide polymorphism (SNP) typing. We devised novel BDF nucleosides, U-Py and C-Py, which contain a pyrenecarboxamide chromophore connected by a propargyl linker. The fluorescence spectrum of the duplex containing a U-Py/A base pair showed a strong emission at 397 nm on 327 nm excitation. In contrast, the fluorescence of duplexes containing U-Py/N base pairs (N = C, G, or T) was considerably weaker. The proposed structure of the duplex containing a matched U-Py/A base pair suggests that the high polarity near the pyrenecarboxamide group is responsible for the strong A-selective fluorescence emission. Moreover, the fluorescence of the duplex containing a U-Py/A base pair was not quenched by a flanking C/G base pair. The fluorescence properties are quite different from previous BDF nucleobases, where fluorescence is quenchable by flanking C/G base pairs. The duplex containing the C derivative, C-Py, selectively emitted fluorescence when the base opposite C-Py was G. The drastic change of fluorescence intensity by the nature of the complementary base is extremely useful for SNP typing. U-Py- and C-Py-containing oligodeoxynucleotides acted as effective reporter probes for homogeneous SNP typing of DNA samples containing c-Ha-ras and BRCA2 SNP sites.
Pyrene-Labeled Base-Discriminating Fluorescent DNA Probes for Homogeneous SNP Typing
摘要:
This paper describes the design of novel base-discriminating fluorescent (BDF) nucleobases and their application to single nucleotide polymorphism (SNP) typing. We devised novel BDF nucleosides, U-Py and C-Py, which contain a pyrenecarboxamide chromophore connected by a propargyl linker. The fluorescence spectrum of the duplex containing a U-Py/A base pair showed a strong emission at 397 nm on 327 nm excitation. In contrast, the fluorescence of duplexes containing U-Py/N base pairs (N = C, G, or T) was considerably weaker. The proposed structure of the duplex containing a matched U-Py/A base pair suggests that the high polarity near the pyrenecarboxamide group is responsible for the strong A-selective fluorescence emission. Moreover, the fluorescence of the duplex containing a U-Py/A base pair was not quenched by a flanking C/G base pair. The fluorescence properties are quite different from previous BDF nucleobases, where fluorescence is quenchable by flanking C/G base pairs. The duplex containing the C derivative, C-Py, selectively emitted fluorescence when the base opposite C-Py was G. The drastic change of fluorescence intensity by the nature of the complementary base is extremely useful for SNP typing. U-Py- and C-Py-containing oligodeoxynucleotides acted as effective reporter probes for homogeneous SNP typing of DNA samples containing c-Ha-ras and BRCA2 SNP sites.
Water compatible triazole linked pyrene-C1-glucosyl fluorescent sensor for Au3+ and living cell imaging studies
作者:Samiul Islam Hazarika、Bholanath Dolai、Ananta Kumar Atta
DOI:10.1016/j.molstruc.2019.127272
日期:2020.2
fluorescent sensor 1 for selectiverecognition of Au3+ in aqueous medium at physiological pH. The sensor provides important features such as high selectivity and sensitivity, low detection limit, reversibility and quick response time. The selectivity of 1 towards Au3+ ion is established by changes of absorbance and fluorescence in the presence of Au3+ ions. The formation of 1:1 complex (1-Au3+) was established
Fluorescent dyes, ink compositions comprising the dyes, methods and devices for printing the ink compositions, images printed using the ink compositions and methods for authenticating the printed images are provided. The fluorescent dyes are heterorotaxanes that include large macrocyclic rings around fluorophores and are capable of emitting solid-state fluorescence. When the heterorotaxanes are combined with encapsulating agents and competitive binding agents in aqueous solution, the resulting ink composition exhibits a complex, dynamic equilibrium that provides a tunable fluorescence emission spectrum with a non-linear response to the dye concentration.
SUPRAMOLECULAR FLUORESCENT DYES
申请人:Northwestern University
公开号:US20160137845A1
公开(公告)日:2016-05-19
Fluorescent dyes are provided. The fluorescent dyes are heterorotaxanes that include large macrocyclic rings around fluorophores and are capable of emitting solid-state fluorescence.