A Ligand-Based Virtual Screening Approach to Identify Small Molecules as hERG Channel Activators
作者:Elisa Giacomini、Rosa Buonfiglio、Matteo Masetti、Yuhong Wang、Gea-Ny Tseng、Marinella Roberti、Maurizio Recanatini
DOI:10.2174/1386207318666150305121841
日期:2015.4.23
The hERG potassium channel is currently emerging as a potential target for the treatment of
some forms of arrhythmias or to contrast an unintentional channel block caused by drugs. Despite its
therapeutic relevance, so far only few compounds are described as able to enhance channel function by
potentiating hERG currents. This gap is also related to the lack of hERG crystal structure which strongly limits the
possibility to employ structure-based techniques in the search and design of novel activators. To overcome this limitation,
in the present work, a ligand-based virtual screening was performed using as separate search queries two conformations of
NS1643, the most deeply investigated and better characterized hERG activator. The library of compounds resulting from
the virtual screening was then clustered based on recurring chemical features, and 5 hits were selected to be evaluated for
their ability to enhance hERG current in vitro. Compound 3 showed a good activating effect, also displaying a mechanism
of action similar to that of NS1643. Moreover, the most interesting compounds were further investigated by synthesizing
in a parallel fashion some analogs, with the aim to get insights about structure-activity relationships.
hERG 钾通道目前正成为治疗某些形式心律失常或对比药物引起的无意通道阻滞的潜在靶点。尽管它具有治疗意义,但迄今为止,只有极少数化合物能通过增强 hERG 电流来增强通道功能。这一空白也与缺乏 hERG 晶体结构有关,这极大地限制了采用基于结构的技术寻找和设计新型激活剂的可能性。为了克服这一限制,本研究利用 NS1643 的两种构象作为单独的搜索查询,进行了基于配体的虚拟筛选,NS1643 是研究最深入、特征最明显的 hERG 激活剂。然后,根据重复出现的化学特征对虚拟筛选出的化合物库进行聚类,选出 5 个命中化合物,对其体外增强 hERG 电流的能力进行评估。化合物 3 表现出良好的激活效果,其作用机制也与 NS1643 相似。此外,通过平行合成一些类似物,对最有趣的化合物进行了进一步研究,目的是深入了解其结构与活性的关系。