Does the partial molar volume of a solute reflect the free energy of hydrophobic solvation?
作者:Anna Szymaniec-Rutkowska、Ewa Bugajska、Sławomir Kasperowicz、Kinga Mieczkowska、Agnieszka M. Maciejewska、Jarosław Poznański
DOI:10.1016/j.molliq.2019.111527
日期:2019.11
thermal shift assay. According to the hierarchical clustering procedure, the excess volume, defined as the difference between the experimentally determined partial molar volume and the calculated in silico molecular volume, was found to be distant from any commonly used hydrophobicity descriptors of the ligand. The excess volume, however, properly predicts solute binding affinity. On the way, we have proved
卤代杂环配体被广泛用作蛋白激酶的有效且经常选择性的抑制剂。然而,很少有游离配体的疏水溶剂化的确切贡献解释了有助于配体结合的自由能的相互作用的平衡。在这里,我们提出了一种基于体积数据的新实验方法,以估计配体的疏水性。我们已经针对一系列十种不同卤代的苯并三唑测试了该方法,并使用热移分析法评估了其与靶蛋白激酶CK2的结合亲和力。根据分级聚类程序,将多余体积定义为实验确定的部分摩尔体积与计算机计算得出的摩尔数之差发现分子体积与配体的任何常用疏水性描述符相距甚远。但是,过量会正确预测溶质结合亲和力。在途中,我们已经证明卤代苯并三唑与蛋白激酶CK2的结合主要是由疏水相互作用驱动的。