N,N-diisopropyl-P-[3-(naphthalen-1-yl)propyl]phosphonamidous chloride | 484689-29-4

• 分子结构分类: 有机化合物 - 苯类化合物 - 萘
• 英文名称: N,N-diisopropyl-P-[3-(naphthalen-1-yl)propyl]phosphonamidous chloride
• 英文别名: N-[chloro(3-naphthalen-1-ylpropyl)phosphanyl]-N-propan-2-ylpropan-2-amine
• CAS: 484689-29-4
• 化学式: C₁₉H₂₇ClNP
• 分子量: 335.857
• InChiKey: PKVOQKSFRCSPTN-UHFFFAOYSA-N

计算性质

• 辛醇/水分配系数(LogP)：
  6.44
• 重原子数：
  22.0
• 可旋转键数：
  7.0
• 环数：
  2.0
• sp3杂化的碳原子比例：
  0.47
• 拓扑面积：
  3.24
• 氢给体数：
  0.0
• 氢受体数：
  1.0

反应信息

• 作为反应物：
  描述：

  5'-O-(二甲氧基三苯甲基)-N-异丁酰基-2'-脱氧胞苷 、 N,N-diisopropyl-P-[3-(naphthalen-1-yl)propyl]phosphonamidous chloride 在 N,N-二异丙基乙胺 作用下， 以 二氯甲烷 为溶剂， 反应 2.0h， 以31%的产率得到2'-deoxy-5'-O-(4,4'-dimethoxytrityl)-N⁴-isobutyrylcytidine 3'-{N,N-diisopropyl-P-[3-(naphthalen-1-yl)propyl]phosphonamidite}
  参考文献：
  名称：

  Synthesis and Properties of Nonpolar DNA (Arylalkyl)phosphonates

  摘要：

  The eight (arylalkyl)-modified phosphoramidites (=(arylalkyl)phosphonamidites) 1-8 (Fig. 2) were synthesized (Schemes 1-3) and incorporated at different positions into 2'-deoxyoligonucleotides. The [P(R)]and [P(S)]-diastereoisomers of the hexanucleotides 32-39 (Table 1) and of the dodecanucleotides 41-45 (Table 2) obtained were separated by means of reversed-phase HPLC. UV, CD, and fluorescence spectroscopy were used to investigate the thermal stability (T-m) and the structural changes of their DNA duplexes with 5'-d(CGCGCG)-3' and 5'-d(ATGATTGACCTG)-3', respectively. The T-m values significantly depend on the place of modification (Table 2). A dangling-end effect is observed when the [3-(anthracen-9-yl)propyl]-modified 8 is attached at the 5'-terminus (see duplex with 45c). In the case of the incorporation of aromatic moieties tethered via a methylene linker to the P-atom (benzyl- and (naphthalen-1-ylmethyl)-modified 1 and 6, resp.), the duplexes with the [P(R)]-oligonucleotides are more stable than those with the [P(S)]-isomers, whereas in the case of longer alkyl chains at the P-atom (see 2-5), the T-m values show the reverse tendency. The observed T-m differences are assigned to changes in base stacking (Figs. 6 and 7).

  DOI：

  10.1002/1522-2675(200208)85:8<2503::aid-hlca2503>3.0.co;2-i
• 作为产物：
  描述：

  1-(3-溴丙基)萘 在 magnesium 作用下， 以 乙醚 、 二氯甲烷 为溶剂， 反应 18.5h， 生成 N,N-diisopropyl-P-[3-(naphthalen-1-yl)propyl]phosphonamidous chloride
  参考文献：
  名称：

  Synthesis and Properties of Nonpolar DNA (Arylalkyl)phosphonates

  摘要：

  The eight (arylalkyl)-modified phosphoramidites (=(arylalkyl)phosphonamidites) 1-8 (Fig. 2) were synthesized (Schemes 1-3) and incorporated at different positions into 2'-deoxyoligonucleotides. The [P(R)]and [P(S)]-diastereoisomers of the hexanucleotides 32-39 (Table 1) and of the dodecanucleotides 41-45 (Table 2) obtained were separated by means of reversed-phase HPLC. UV, CD, and fluorescence spectroscopy were used to investigate the thermal stability (T-m) and the structural changes of their DNA duplexes with 5'-d(CGCGCG)-3' and 5'-d(ATGATTGACCTG)-3', respectively. The T-m values significantly depend on the place of modification (Table 2). A dangling-end effect is observed when the [3-(anthracen-9-yl)propyl]-modified 8 is attached at the 5'-terminus (see duplex with 45c). In the case of the incorporation of aromatic moieties tethered via a methylene linker to the P-atom (benzyl- and (naphthalen-1-ylmethyl)-modified 1 and 6, resp.), the duplexes with the [P(R)]-oligonucleotides are more stable than those with the [P(S)]-isomers, whereas in the case of longer alkyl chains at the P-atom (see 2-5), the T-m values show the reverse tendency. The observed T-m differences are assigned to changes in base stacking (Figs. 6 and 7).

  DOI：

  10.1002/1522-2675(200208)85:8<2503::aid-hlca2503>3.0.co;2-i