3-O-(4,4'-dimethoxytrityl)-2(S)-[N-(thymin-1-ylacetyl)amino]-1(R)-phenyl-1,3-propanediol | 331821-97-7

• 分子结构分类: 有机化合物 - 苯类化合物 - 三苯基化合物
• 英文名称: 3-O-(4,4'-dimethoxytrityl)-2(S)-[N-(thymin-1-ylacetyl)amino]-1(R)-phenyl-1,3-propanediol
• 英文别名: N-[(1R,2S)-3-[bis(4-methoxyphenyl)-phenylmethoxy]-1-hydroxy-1-phenylpropan-2-yl]-2-(5-methyl-2,4-dioxopyrimidin-1-yl)acetamide
• CAS: 331821-97-7
• 化学式: C₃₇H₃₇N₃O₇
• 分子量: 635.717
• InChiKey: JGJIVPQUOSTMHA-UZNNEEJFSA-N

计算性质

• 辛醇/水分配系数(LogP)：
  4.3
• 重原子数：
  47
• 可旋转键数：
  13
• 环数：
  5.0
• sp3杂化的碳原子比例：
  0.22
• 拓扑面积：
  126
• 氢给体数：
  3
• 氢受体数：
  7

反应信息

• 作为反应物：
  描述：

  双(二异丙基氨基)(2-氰基乙氧基)膦 、 3-O-(4,4'-dimethoxytrityl)-2(S)-[N-(thymin-1-ylacetyl)amino]-1(R)-phenyl-1,3-propanediol 在 四氮唑 作用下， 以 1,2-二氯乙烷 为溶剂， 反应 3.0h， 生成 N-[(1R,2S)-3-[bis(4-methoxyphenyl)-phenylmethoxy]-1-[2-cyanoethoxy-[di(propan-2-yl)amino]phosphanyl]oxy-1-phenylpropan-2-yl]-2-(5-methyl-2,4-dioxopyrimidin-1-yl)acetamide
  参考文献：
  名称：

  Oligonucleotides with ( N -thymin-1-ylacetyl)-1-arylserinol backbone: chiral acyclic analogs with restricted conformational flexibility

  摘要：

  All four threo/erythro stereoisomers of 2(R/S)-(N-thymin-1-ylacetyl)-amino-1(R/S)-aryl-1,3-propanediol were synthesized from 2(R/S)-amino-1(R/S)-aryl-1,3-propanediol in 45-50% overall yield. The inversion of the C1 hydroxyl group in (1S, 2S), 4a, and (1R, 2R), 4d, was accomplished under Mitsunobu conditions to get (IR, 2S), 4c, and (1S, 2R), 4e isomers, respectively Compounds 4a-f were individually converted into their respective amidite synthons 5a-f. All these stereoisomers were individually incorporated into oligonucleotides (ODNs) at pre-determined positions and various biophysical studies of their hybrids with complementary DNA were carried out. All the four stereoisomers when present at 3'/5' terminal positions in the ODNs were almost equally efficient in their binding capacity as the natural oligomers, with (1S, 2S) being marginally favored over other stereoisomers. The incorporation of these chiral acyclic nucleosides also protected the ODN against enzymatic degradation. (C) 2001 Elsevier Science Ltd. All rights reserved.

  DOI：

  10.1016/s0040-4020(00)01099-1
• 作为产物：
  描述：

  (1S,2S)-(+)-2-氨基-1-苯基-1,3-丙二醇 在 吡啶 、 偶氮二甲酸二异丙酯 、 氨 、 sodium carbonate 、 potassium carbonate 、 三苯基膦 作用下， 以 四氢呋喃 、 1,4-二氧六环 、 甲醇 、 N,N-二甲基甲酰胺 为溶剂， 生成 3-O-(4,4'-dimethoxytrityl)-2(S)-[N-(thymin-1-ylacetyl)amino]-1(R)-phenyl-1,3-propanediol
  参考文献：
  名称：

  Oligonucleotides with ( N -thymin-1-ylacetyl)-1-arylserinol backbone: chiral acyclic analogs with restricted conformational flexibility

  摘要：

  All four threo/erythro stereoisomers of 2(R/S)-(N-thymin-1-ylacetyl)-amino-1(R/S)-aryl-1,3-propanediol were synthesized from 2(R/S)-amino-1(R/S)-aryl-1,3-propanediol in 45-50% overall yield. The inversion of the C1 hydroxyl group in (1S, 2S), 4a, and (1R, 2R), 4d, was accomplished under Mitsunobu conditions to get (IR, 2S), 4c, and (1S, 2R), 4e isomers, respectively Compounds 4a-f were individually converted into their respective amidite synthons 5a-f. All these stereoisomers were individually incorporated into oligonucleotides (ODNs) at pre-determined positions and various biophysical studies of their hybrids with complementary DNA were carried out. All the four stereoisomers when present at 3'/5' terminal positions in the ODNs were almost equally efficient in their binding capacity as the natural oligomers, with (1S, 2S) being marginally favored over other stereoisomers. The incorporation of these chiral acyclic nucleosides also protected the ODN against enzymatic degradation. (C) 2001 Elsevier Science Ltd. All rights reserved.

  DOI：

  10.1016/s0040-4020(00)01099-1

文献信息

• Oligonucleotides with ( N -thymin-1-ylacetyl)-1-arylserinol backbone: chiral acyclic analogs with restricted conformational flexibility
  作者：Vipul S Rana、Vaijayanti A Kumar、Krishna N Ganesh

  DOI：10.1016/s0040-4020(00)01099-1

  日期：2001.2

  All four threo/erythro stereoisomers of 2(R/S)-(N-thymin-1-ylacetyl)-amino-1(R/S)-aryl-1,3-propanediol were synthesized from 2(R/S)-amino-1(R/S)-aryl-1,3-propanediol in 45-50% overall yield. The inversion of the C1 hydroxyl group in (1S, 2S), 4a, and (1R, 2R), 4d, was accomplished under Mitsunobu conditions to get (IR, 2S), 4c, and (1S, 2R), 4e isomers, respectively Compounds 4a-f were individually converted into their respective amidite synthons 5a-f. All these stereoisomers were individually incorporated into oligonucleotides (ODNs) at pre-determined positions and various biophysical studies of their hybrids with complementary DNA were carried out. All the four stereoisomers when present at 3'/5' terminal positions in the ODNs were almost equally efficient in their binding capacity as the natural oligomers, with (1S, 2S) being marginally favored over other stereoisomers. The incorporation of these chiral acyclic nucleosides also protected the ODN against enzymatic degradation. (C) 2001 Elsevier Science Ltd. All rights reserved.