A highly selective structure-based virtual screening model of Palm I allosteric inhibitors of HCV Ns5b polymerase enzyme and its application in the discovery and optimization of new analogues
摘要:
First structure-based activity prediction model of topologically diverse inhibitors of Palm I allosteric site of HCV NS5b polymerase enzyme is reported here. The model is a workflow of structure-based pharmacophore followed by guided docking. The pharmacophore was constructed using a novel procedure which includes PLIF (protein ligand interaction fingerprint), Hypogen, contact-based pharmacophore and shape constraints. The guided docking was tweaked using both a scoring function of high correlation with activity (ChemPLP) and essential pharmacophore features. Statistically, ROC analysis for the workflow, deploying the novel technique of virtual decoys, yielded AUC of 0.947. Experimentally, the model was used to screen Asinex GOLD database yielding a new hit with a different scaffold which was further confirmed by synthesis and biological evaluation. (C) 2012 Elsevier Masson SAS. All rights reserved.
The chemistry of 2<i>H</i>-3,1-benzoxazine-2,4(1<i>H</i>)dione (isatoic anhydrides) 1. The synthesis of<i>N</i>-substituted 2<i>H</i>-3,1-benzoxazine-2,4(1<i>H</i>)diones
作者:Goetz E. Hardtmann、Gabor Koletar、Oskar R. Pfister
DOI:10.1002/jhet.5570120325
日期:1975.6
Three methods for the preparation of N-substituted 2H-3,1-benzoxazine-2,4(1H)diones (isatoicanhydrides) (1) utilizing 2-chloro-, 2-nitrobenzoic acids and N-unsubstituted isatoicanhydrides as starting materials, are described.
三种制备N-取代的2 H -3,1-苯并恶嗪-2,4(1 H)二酮(乙酸酐)的方法(1)使用2-氯-,2-硝基苯甲酸和N-未取代的等角酸酐作为制备方法描述了起始材料。
HARDTMANN G. E.; KOLETAR G.; PFISTER O. R.; GOGERTY J. H.; IORIO L. C., J. MED. CHEM. <JMCM-AR>, 1975, 18, NO 5, 447-453
作者:HARDTMANN G. E.、 KOLETAR G.、 PFISTER O. R.、 GOGERTY J. H.、 IORIO L. C.
DOI:——
日期:——
A highly selective structure-based virtual screening model of Palm I allosteric inhibitors of HCV Ns5b polymerase enzyme and its application in the discovery and optimization of new analogues
作者:Amr H. Mahmoud、Dalal A. Abou El Ella、Mohamed A.H. Ismail、Khaled A.M. Abouzid
DOI:10.1016/j.ejmech.2012.04.016
日期:2012.11
First structure-based activity prediction model of topologically diverse inhibitors of Palm I allosteric site of HCV NS5b polymerase enzyme is reported here. The model is a workflow of structure-based pharmacophore followed by guided docking. The pharmacophore was constructed using a novel procedure which includes PLIF (protein ligand interaction fingerprint), Hypogen, contact-based pharmacophore and shape constraints. The guided docking was tweaked using both a scoring function of high correlation with activity (ChemPLP) and essential pharmacophore features. Statistically, ROC analysis for the workflow, deploying the novel technique of virtual decoys, yielded AUC of 0.947. Experimentally, the model was used to screen Asinex GOLD database yielding a new hit with a different scaffold which was further confirmed by synthesis and biological evaluation. (C) 2012 Elsevier Masson SAS. All rights reserved.
Design, Synthesis, Anti-Varicella-Zoster and Antimicrobial Activity of (Isoxazolidin-3-yl)Phosphonate Conjugates of N1-Functionalised Quinazoline-2,4-Diones
作者:Magdalena Łysakowska、Iwona E. Głowacka、Graciela Andrei、Dominique Schols、Robert Snoeck、Paweł Lisiecki、Magdalena Szemraj、Dorota G. Piotrowska
DOI:10.3390/molecules27196526
日期:——
diastereoisomeric 3-(diethoxyphosphonyl)isoxazolidines with a N1-benzylquinazoline-2,4-dione unit at C5. The obtained compounds were assessed for antiviral and antibacterial activities. Several compounds showed moderate inhibitory activities against VZV with EC50 values in the range of 12.63–58.48 µM. A mixture of isoxazolidines cis-20c/trans-20c (6:94) was found to be the most active against B. cereus PCM