Nucleotide compound, nucleotide block oligonucleotide, and method for producing them
申请人:Toagosei Company, Ltd.
公开号:US06380378B1
公开(公告)日:2002-04-30
Novel nucleotide compounds represented by the formula (I)
wherein R1 represents a protective group or a PEG bearing organic group; R2, R2′, R2″, R3, R3′ and R3″ each represents a hydrogen atom or an alkyl, cycloalkyl, aryl or aralkyl group which may contain a hetero-atom; B1, B2, B3 and B4 each represents a base, if necessary, protected by a protective group common in nucleotide chemistry or by a PEG bearing organic group; X, X′ and X″ each represents an oxygen atom or a sulfur atom; Y represents an azolyl group, a mono- or di-alkylamino group or a saturated nitrogenous heterocyclic ring; A1, A2, A3 and A4 each represents a hydrogen atom, a hydroxyl group, an alkoxy group or a trialkylsilyloxy group; and m and n each represents 0 or an integer of 1 to 100. The nucleotide of the formula (I) can be used as it is in a reaction mixture for further reaction with 3′-O- and 5′-O-unprotected nucleoside or nucleotide of the formula (II) to yield a nucleotide block or oligonucleotide, and thus is useful as in situ DNA synthesis reagents.
Use of 2-Cyano-1-<i>t</i>-butylethyl or 2-Cyano-1-(1,1-diethyl-3-butenyl)ethyl as a Phosphorus Protecting Group in Oligonucleotide Synthesis via<i>in situ</i>Phosphoramidite Methods
作者:Akinori Kitamura、Yoji Horie、Tadao Yoshida
DOI:10.1246/cl.2000.1134
日期:2000.10
situ by the use of 2-cyano-1-t-butylethyl or 2-cyano-1-(1,1-diethyl-3-butenyl)ethyl phosphorobisimidazolidite as a new phosphitylating reagent. The phosphorimidazolidites were found to be key intermediates for preparing 5′-O-protected nucleoside 3′-O-monoalkylphosphoramidites in situ useful in the solid-phase oligonucleotide synthesis, and for synthesizing conveniently 3′-OH free dinucleoside phosphates