2'-deoxy-3'-O-(4,4'-dimethoxytrityl)-N4-{[2-(4-nitrophenyl)ethoxy]carbonyl}cytidine | 151170-92-2

• 分子结构分类: 有机化合物 - 苯类化合物 - 三苯基化合物
• 英文名称: 2'-deoxy-3'-O-(4,4'-dimethoxytrityl)-N4-{[2-(4-nitrophenyl)ethoxy]carbonyl}cytidine
• 英文别名: 2'-deoxy-3'-O-(4,4'-dimethoxytrityl)-N⁴-{[2-(4-nitrophenyl)ethoxy]carbonyl}cytidine
• CAS: 151170-92-2
• 化学式: C₃₉H₃₈N₄O₁₀
• 分子量: 722.752
• InChiKey: NHCGAYDRLAPMNX-GABYNLOESA-N

物化性质

• 密度：
  1.33±0.1 g/cm3(Temp: 20 °C; Press: 760 Torr)(predicted)

计算性质

• 辛醇/水分配系数(LogP)：
  5.62
• 重原子数：
  53.0
• 可旋转键数：
  14.0
• 环数：
  6.0
• sp3杂化的碳原子比例：
  0.26
• 拓扑面积：
  173.51
• 氢给体数：
  2.0
• 氢受体数：
  12.0

反应信息

• 作为反应物：
  描述：

  双(二异丙基氨基)(2-氰基乙氧基)膦 、 2'-deoxy-3'-O-(4,4'-dimethoxytrityl)-N4-{[2-(4-nitrophenyl)ethoxy]carbonyl}cytidine 在 四氮唑 作用下， 以 乙腈 为溶剂， 反应 1.0h， 以88%的产率得到2'-deoxy-3'-O-(4,4'-dimethoxytrityl)-N⁴-{[2-(4-nitrophenyl)ethoxy]carbonyl}cytidine 5'-(2-cyanoethyl diisopropylphosphoramidite)
  参考文献：
  名称：

  核苷酸，第 LXV 部分，2'-脱氧核糖核苷 5'-亚磷酰胺的合成：反向 (5'-3')-寡核苷酸方法的新构件

  摘要：

  The syntheses of the 3'-O-(4,4'-dimethoxytrityl)-protected 5'-phosphoramidites 25-28 and 5'-(hydrogen succinates) 29-32, which can be used as monomeric building blocks for the inverse (5'-3')-oligodeoxyribonucleotide synthesis are described (Scheme). These activated nucleosides and nucleotides were obtained by two slightly different four-step syntheses starting with the base-protected nucleosides 13-20. For the protection of the aglycon residues, the well-established 2-(4-nitrophenyl)ethyl (npe) and [2-(4-nitrophenyl)ethoxy]carbonyl (npeoc) groups were used. The assembly of the oligonucleotides required a slightly increased coupling time of 3 min in application of the common protocol (see Table 1). The use of pyridinium hydrochloride as an activator (instead of 1H-tetrazole) resulted in an extremely shorter activation time of 30 seconds. We established the efficiency of this inverse strategy by the synthesis of the oligonucleotide 3'-conjugates 33 and 34 which carry lipophilic caps derived from cholesterol and vitamin E, respectively, as well as by the formation of (3'-3')- and (5'-5')-internucleotide linkages (see Table 2).

  DOI：

  10.1002/1522-2675(20000809)83:8<2023::aid-hlca2023>3.0.co;2-p
• 作为产物：
  描述：

  2'-deoxy-5'-O-[dimethyl(1,1,2-trimethylpropyl)silyl]-N4-{[2-(4-nitrophenyl)ethoxy]carbonyl}cytidine 在 吡啶 、 四丁基氟化铵 、 溶剂黄146 作用下， 以 四氢呋喃 为溶剂， 反应 291.0h， 生成 2'-deoxy-3'-O-(4,4'-dimethoxytrityl)-N4-{[2-(4-nitrophenyl)ethoxy]carbonyl}cytidine
  参考文献：
  名称：

  An Inverse Approach in Oligodeoxyribonucleotide Synthesis

  摘要：

  We synthesized 3'-O-dimethoxytrityl-5'O-phosphoramidites and 5'-O-succinates which can be used as monomeric building blocks for the built up of oligodeoxyribonucleotides in the alternative 5'-3' direction. With this inverse strategy oligonucleotide 3'-conjugates as well as 3'-3' and 5'-5' internucleotidic linkages can be easily formed.

  DOI：

  10.1080/07328319708006249