Conformation analysis device, analysis method, conformational notation device and notation method
申请人:Izumi Hiroshi
公开号:US11119033B2
公开(公告)日:2021-09-14
A conformation analysis device and analysis method with which discrimination can be achieved even if there is a subtle difference in a conformational structure, a given molecule can be processed in a unified manner, and large-scale computer processing can be performed, and a conformational notation device and notation method with which even in the case where a conformation cannot be uniquely determined if a rule in accordance with the IUPAC Nomenclature is followed, the conformation can be uniquely notated, a given molecule can be processed in a unified manner, and large-scale computer processing can be performed, are provided. In one embodiment of the invention, a processing section receives an input of a chemical structural formula of a compound to be analyzed, puts a predetermined code indicating a dihedral angle to each chemical binding site based on the received chemical structural formula, extracts an encoded conformational notation of interest with respect to a structure capable of uniquely determining a conformation with one conformational notation, and stores the extracted encoded conformational notation in a storage section. Then, the processing section creates a molecular model based on the extracted encoded conformational notation, performs geometry optimization and frequency calculation for the created molecular model, determines a geometry optimized structure and a physical property value of the geometry optimized structure, extracts the encoded conformational notation from the storage section, and performs a homology analysis based on the notation.
一种构象分析装置和分析方法,利用这种装置和方法,即使构象结构存在细微差别,也可以进行鉴别,可以统一处理给定的分子,并可以进行大规模计算机处理、以及一种构象记谱装置和记谱方法,利用这种装置和方法,即使在遵循 IUPAC 命名法的规则也不能唯一确定构象的情况下,也能对构象进行唯一记谱,以统一的方式处理给定的分子,并能进行大规模计算机处理。在本发明的一个实施方案中,处理部分接收输入的待分析化合物的化学结构式,根据接收到的化学结构式将表示二面角的预定代码放入每个化学结合位点,提取相对于能够用一个构象记号唯一确定构象的结构的感兴趣的编码构象记号,并将提取的编码构象记号存储在存储部分。然后,处理部分根据提取的编码构象符号创建分子模型,对创建的分子模型进行几何优化和频率计算,确定几何优化结构和几何优化结构的物理属性值,从存储部分提取编码构象符号,并根据该符号进行同源性分析。