N⁶-Benzoyl-9-<3'-deoxy-3'-fluoro-5'-O-(monomethoxytrityl)-β-D-xylofuranosyl>adenine | 132849-70-8

• 分子结构分类: 有机化合物 - 苯类化合物 - 三苯基化合物
• 英文名称: N⁶-Benzoyl-9-<3'-deoxy-3'-fluoro-5'-O-(monomethoxytrityl)-β-D-xylofuranosyl>adenine
• 英文别名: 9-<5-O-(Monomethoxytrityl)-3-fluoro-3-deoxy-β-D-xylofuranosyl>-N⁶-benzoyladenine；N⁶-Benzoyl-9-[3'-deoxy-3'-fluoro-5'-O-(monomethoxytrityl)-β-D-xylofuranosyl]adenine；N-[9-[(2R,3S,4R,5R)-4-fluoro-3-hydroxy-5-[[(4-methoxyphenyl)-diphenylmethoxy]methyl]oxolan-2-yl]purin-6-yl]benzamide
• CAS: 132849-70-8
• 化学式: C₃₇H₃₂FN₅O₅
• 分子量: 645.69
• InChiKey: KYPQJQMTVUTNRI-HZODXTMNSA-N

计算性质

• 辛醇/水分配系数(LogP)：
  5.6
• 重原子数：
  48
• 可旋转键数：
  10
• 环数：
  7.0
• sp3杂化的碳原子比例：
  0.19
• 拓扑面积：
  121
• 氢给体数：
  2
• 氢受体数：
  9

反应信息

• 作为反应物：
  描述：

  N⁶-Benzoyl-9-<3'-deoxy-3'-fluoro-5'-O-(monomethoxytrityl)-β-D-xylofuranosyl>adenine 在 4-硝基苯甲醛肟 作用下， 生成 Triethylammonium 9-<3-fluoro-3-deoxy-5-O-(monomethoxytrityl)-β-D-xylofuranosyl>-N⁶-benzoyladenine-2'-<2-(4-nitrophenyl)ethyl phosphate>
  参考文献：
  名称：

  2-5A的3'-氟-3'-脱氧类似物的立体化学在与小鼠RNase L结合和激活中的作用

  摘要：

  两套2-5A类似物的三聚体的含9-（3-氟-3-脱氧β-d木-呋喃糖基）腺嘌呤（A合成˚F）或3'-氟-3'-脱氧腺苷（A ˚F）描述了在链的不同位置上的）以及相应的5'-单磷酸盐和5'-二磷酸化（核心）三聚体的制备。2-5A（i）的每个核糖和木糖异构体对的氟脱氧类似物与p 3（A2'p）3 A3'[ 32 P] pC3'p竞争结合L 929细胞提取物中RNase L的能力，和（ii）从L 929激活部分纯化的RNase L将用于水解聚（U）[ 3 H]的细胞提取物与相关的3'-脱氧类似物[ Torrence等人，J。化学 263，1131（1988）]和三聚体母体，第3阿3，分别使用radiobinding和RNase L-（2'，5'）pentaadenylate（芯） -琼脂糖测定，。证据表明三聚体的立体化学起着重要作用，特别是在第二步过程中。最惊人的发现是，与2-5A相比，p 3 A（A

  DOI：

  10.1002/recl.19951140202
• 作为产物：
  描述：

  (2R,3S,4R,5R)-2-(6-amino-9H-purin-9-yl)-4-fluoro-5-(hydroxymethyl)tetrahydrofuran-3-ol 在 吡啶 作用下， 反应 48.0h， 生成 N⁶-Benzoyl-9-<3'-deoxy-3'-fluoro-5'-O-(monomethoxytrityl)-β-D-xylofuranosyl>adenine
  参考文献：
  名称：

  核苷酸。XXXIV部分修饰的寡聚2'–5'A类似物的合成：潜在的抗病毒药†

  摘要：

  一系列新的2'–5'-寡核苷酸三聚体，其带有9-（2'，3'-脱水-β-D-核呋喃糖基）-（59），9-（3'-脱氧-β-D-甘油- pent-3-enofuranosyl）-（63），9-（3'-azido-3'-deoxy-β-D-xylofuranosyl）-（62）和9-（3'-halo-3'-deoxy-β通过磷酸三酯法合成了在2'-末端的-D-二呋喃呋喃糖基）腺嘌呤（60和61）部分。的适当的保护，改性单体结构单元（6，9，16，19，27，33，36，37，和43通常通过一系列反应将保护基团引入正确的位置来获得）。他们与中间商二聚体2'-终端磷酸二酯缩合48和49导致了充分的保障2'，5'-三聚体50-58，其被解封，形成游离'，5'-三聚体59 - 63。脱保护时容易消除HBr不允许形成三聚（3'-溴-3'-脱氧-β-D-木呋喃糖基）腺嘌呤类似物，而仅形成63个带有不饱和糖

  DOI：

  10.1002/hlca.19910740104

文献信息

• Nucleotides. Part XXXIVSynthesis of Modified Oligomeric 2?-5?A Analogues: Potential Antiviral Agents
  作者：Piet Herdewijn、Klaus Ruf、Wolfgang Pfleiderer

  DOI：10.1002/hlca.19910740104

  日期：1991.1.30

  right positions. Their condensations with the intermediary dimeric 2′-terminal phosphodiesters 48 and 49 led to the fully protected 2′–5′-trimers 50–58 which were deblocked to form the free 2′–5′-trimers 59–63. Easy elimination of HBr on deprotection did not allow to form the trimeric (3′-bromo-3′-deoxy-β-D-xylofuranosyl)adenine analogue but only 63 carrying an unsaturated sugar moiety instead. The newly

  一系列新的2'–5'-寡核苷酸三聚体，其带有9-（2'，3'-脱水-β-D-核呋喃糖基）-（59），9-（3'-脱氧-β-D-甘油- pent-3-enofuranosyl）-（63），9-（3'-azido-3'-deoxy-β-D-xylofuranosyl）-（62）和9-（3'-halo-3'-deoxy-β通过磷酸三酯法合成了在2'-末端的-D-二呋喃呋喃糖基）腺嘌呤（60和61）部分。的适当的保护，改性单体结构单元（6，9，16，19，27，33，36，37，和43通常通过一系列反应将保护基团引入正确的位置来获得）。他们与中间商二聚体2'-终端磷酸二酯缩合48和49导致了充分的保障2'，5'-三聚体50-58，其被解封，形成游离'，5'-三聚体59 - 63。脱保护时容易消除HBr不允许形成三聚（3'-溴-3'-脱氧-β-D-木呋喃糖基）腺嘌呤类似物，而仅形成63个带有不饱和糖
• Striking Ability of Adenosine-2′(3′)-deoxy-3′(2′)-triphosphates and Related Analogues to Replace ATP as Phosphate Donor for All Four Human, and the<i>Drosophila Melanogaster</i>, Deoxyribonucleoside Kinases
  作者：Krzysztof Krawiec、Borys Kierdaszuk、Elena N. Kalinichenko、Elena B. Rubinova、Igor A. Mikhailopulo、Staffan Eriksson、Birgitte Munch-Petersen、David Shugar

  DOI：10.1081/ncn-120019510

  日期：2003.5

  In extension of an earlier report, six non-conventional analogues of ATP, three adenosine-2'-triphosphates (3'-deoxy, 3'-deoxy-3'-fluoro- and 3'-deoxy-3'-fluoroxylo-), and three adenosine-3'-triphosphates (2'-deoxy-, 2'-deoxy-2'-fluoro- and 2'-deoxy-2'-fluoroara-), were compared with ATP as potential phosphate donors for human deoxycytidine kinase (dCK), cytosolic thymidine kinase (TK1), mitochondrial TK2, deoxyguanosine kinase (dGK), and the deoxyribonucleoside kinase (dNK) from Drosophila melanogaster. With one group of enzymes, comprising TK1, TK2, dNK and dCK (with dAdo as acceptor), only 3'-deoxyadenosine-2'-triphosphate was an effective donor (5-60% that for ATP), and the other five analogues much less so, or inactive. With a second set, including dCK (dCyd, but not dAdo, as acceptor) and dGK (dGuo as acceptor), known to share high sequence similarity (approximate to 45% sequence identity), all six analogues were good to excellent donors (13-119% that for ATP). With dCK and ATP1, products were shown to be 5'-phosphates. With dCK, donor properties of the analogues were dependent on the nature of the acceptor, as with natural 5'-triphosphate donors. With dCK (dCyd as acceptor), K-m and V-max for the two 2'(3)deoxyadenosine-3'(2')-triphosphates are similar to those for ATP. With dGK, K-m values are higher than for ATP, while V-max values are comparable. Kinetic studies further demonstrated Michaelis-Menten (non-cooperative) or cooperative kinetics, dependent on the enzyme employed and the nature of the donor. The physiological significance, if any, of the foregoing remains to be elucidated. The overall results are, on the other hand, highly relevant to studies on the modes of interaction of nucleoside kinases with donors and acceptors; and, in particular, to interpretations of the recently reported crystal structures of dGK with bound ATP, of dNK with bound dCyd, and associated modeling studies.
• HERDEWIJN, PIET;RUF, KLAUS;PFLEIDERER, WOLFGANG, HELV. CHIM. ACTA, 74,(1991) N, C. 7-23
  作者：HERDEWIJN, PIET、RUF, KLAUS、PFLEIDERER, WOLFGANG

  DOI：——

  日期：——
• Role of the stereochemistry of 3′-fluoro-3′-deoxy analogues of 2-5A in binding to and activation of mouse RNase L
  作者：Elena N. Kalinichenko、Tatjana L. Podkopaeva、Nicolai E. Poopeiko、Merike Kelve、Mart Saarma、Igor A. Mikhailopulo、Jacquelien E. van den Boogaart、Cornelis Altona

  DOI：10.1002/recl.19951140202

  日期：——

  with p3(A2′p)3A3′[32P]pC3′p for binding to RNase L in L929 cell extracts, and (ii) to activate the partially purified RNase L from L929 cell extracts to hydrolyze poly(U)[3H], was compared to that of the related 3′-deoxy analogue [Torrence et al., J. Biol. Chem. 263, 1131 (1988)] and the parent trimer, p3A3, using radiobinding and RNase L-(2′,5′)pentaadenylate(core)-agarose assays, respectively. Evidence

  两套2-5A类似物的三聚体的含9-（3-氟-3-脱氧β-d木-呋喃糖基）腺嘌呤（A合成˚F）或3'-氟-3'-脱氧腺苷（A ˚F）描述了在链的不同位置上的）以及相应的5'-单磷酸盐和5'-二磷酸化（核心）三聚体的制备。2-5A（i）的每个核糖和木糖异构体对的氟脱氧类似物与p 3（A2'p）3 A3'[ 32 P] pC3'p竞争结合L 929细胞提取物中RNase L的能力，和（ii）从L 929激活部分纯化的RNase L将用于水解聚（U）[ 3 H]的细胞提取物与相关的3'-脱氧类似物[ Torrence等人，J。化学 263，1131（1988）]和三聚体母体，第3阿3，分别使用radiobinding和RNase L-（2'，5'）pentaadenylate（芯） -琼脂糖测定，。证据表明三聚体的立体化学起着重要作用，特别是在第二步过程中。最惊人的发现是，与2-5A相比，p 3 A（A